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Nonlinear data visualization using t-distributed stochastic neighbor embedding (t-SNE) enables the representation of complex single-cell transcriptomic landscapes in two or three dimensions to depict biological populations accurately.…

Genomics · Quantitative Biology 2024-10-02 Hui Ma , Kai Chen

We introduce an improved unsupervised clustering protocol specially suited for large-scale structured data. The protocol follows three steps: a dimensionality reduction of the data, a density estimation over the low dimensional…

Machine Learning · Computer Science 2019-11-05 Joan Garriga , Frederic Bartumeus

The use of covariance kernels is ubiquitous in the field of spatial statistics. Kernels allow data to be mapped into high-dimensional feature spaces and can thus extend simple linear additive methods to nonlinear methods with higher order…

Machine Learning · Statistics 2017-11-16 Jean-Francois Ton , Seth Flaxman , Dino Sejdinovic , Samir Bhatt

Embedding and visualizing large-scale high-dimensional data in a two-dimensional space is an important problem since such visualization can reveal deep insights out of complex data. Most of the existing embedding approaches, however, run on…

Machine Learning · Computer Science 2017-03-06 Minjeong Kim , Minsuk Choi , Sunwoong Lee , Jian Tang , Haesun Park , Jaegul Choo

Previous work generally believes that improving the spatial invariance of convolutional networks is the key to object counting. However, after verifying several mainstream counting networks, we surprisingly found too strict pixel-level…

Computer Vision and Pattern Recognition · Computer Science 2022-08-19 Zhi-Qi Cheng , Qi Dai , Hong Li , JingKuan Song , Xiao Wu , Alexander G. Hauptmann

Parametric embedding methods such as parametric t-SNE (pt-SNE) have been widely adopted for data visualization and out-of-sample data embedding without further computationally expensive optimization or approximation. However, the…

Machine Learning · Computer Science 2018-04-24 Martin Renqiang Min , Hongyu Guo , Dinghan Shen

Most existing graph visualization methods based on dimension reduction are limited to relatively small graphs due to performance issues. In this work, we propose a novel dimension reduction method for graph visualization, called…

Machine Learning · Computer Science 2023-10-18 Xinyu Li , Yao Xiao , Yuchen Zhou

The Gaussian kernel plays a central role in machine learning, uncertainty quantification and scattered data approximation, but has received relatively little attention from a numerical analysis standpoint. The basic problem of finding an…

Numerical Analysis · Mathematics 2021-04-02 Toni Karvonen , Chris J. Oates , Mark Girolami

We present a Gaussian kernel loss function and training algorithm for convolutional neural networks that can be directly applied to both distance metric learning and image classification problems. Our method treats all training features…

Computer Vision and Pattern Recognition · Computer Science 2018-07-03 Benjamin J. Meyer , Ben Harwood , Tom Drummond

A fundamental task in machine learning involves visualizing high-dimensional data sets that arise in high-impact application domains. When considering the context of large imbalanced data, this problem becomes much more challenging. In this…

Machine Learning · Computer Science 2021-09-21 Parisa Hajibabaee , Farhad Pourkamali-Anaraki , Mohammad Amin Hariri-Ardebili

K-Nearest neighbor classifier (k-NNC) is simple to use and has little design time like finding k values in k-nearest neighbor classifier, hence these are suitable to work with dynamically varying data-sets. There exists some fundamental…

Computer Vision and Pattern Recognition · Computer Science 2013-01-29 T. Hitendra Sarma , P. Viswanath , D. Sai Koti Reddy , S. Sri Raghava

3D Gaussian Splatting (3DGS) has emerged as a mainstream solution for novel view synthesis and 3D reconstruction. By explicitly encoding a 3D scene using a collection of Gaussian kernels, 3DGS achieves high-quality rendering with superior…

Computer Vision and Pattern Recognition · Computer Science 2025-01-28 Lei Lan , Tianjia Shao , Zixuan Lu , Yu Zhang , Chenfanfu Jiang , Yin Yang

Designing categorical kernels is a major challenge for Gaussian process regression with continuous and categorical inputs. Despite previous studies, it is difficult to identify a preferred method, either because the evaluation metrics, the…

Machine Learning · Statistics 2025-10-03 Raphaël Carpintero Perez , Sébastien Da Veiga , Josselin Garnier

Due to the sequential sample arrival, changing experiment conditions, and evolution of knowledge, the demand to continually visualize evolving structures of sequential and diverse single-cell RNA-sequencing (scRNA-seq) data becomes…

Genomics · Quantitative Biology 2024-06-24 Hui Ma , Kai Chen

Despite recent advances in automated machine learning, model selection is still a complex and computationally intensive process. For Gaussian processes (GPs), selecting the kernel is a crucial task, often done manually by the expert.…

Machine Learning · Computer Science 2022-10-24 Matthias Bitzer , Mona Meister , Christoph Zimmer

This paper presents a method for hyperspectral image classification that uses support vector data description (SVDD) with the Gaussian kernel function. SVDD has been a popular machine learning technique for single-class classification, but…

Applications · Statistics 2019-04-08 Yuwei Liao , Deovrat Kakde , Arin Chaudhuri , Hansi Jiang , Carol Sadek , Seunghyun Kong

The Gaussian kernel is a very popular kernel function used in many machine learning algorithms, especially in support vector machines (SVMs). It is more often used than polynomial kernels when learning from nonlinear datasets, and is…

Machine Learning · Computer Science 2020-05-27 Arit Kumar Bishwas , Ashish Mani , Vasile Palade

The curse of dimensionality has been studied in different aspects. However, breaking the curse has been elusive. We show for the first time that it is possible to break the curse using the recently introduced Isolation Kernel. We show that…

Machine Learning · Computer Science 2021-09-30 Kai Ming Ting , Takashi Washio , Ye Zhu , Yang Xu

Graph convolutional network (GCN) is now an effective tool to deal with non-Euclidean data, such as social networks in social behavior analysis, molecular structure analysis in the field of chemistry, and skeleton-based action recognition.…

Computer Vision and Pattern Recognition · Computer Science 2020-02-26 Ziqing Yang , Shoudong Han , Jun Zhao

Feature representation is an important aspect of remote-sensing based image classification. While deep convolutional neural networks are able to effectively amalgamate information, large numbers of parameters often make learned features…

Machine Learning · Computer Science 2022-03-07 Joshua Peeples , Sarah Walker , Connor McCurley , Alina Zare , James Keller , Weihuang Xu