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Ordered, collective motions commonly arise spontaneously in systems of many interacting, active units, ranging from cellular tissues and bacterial colonies to self-propelled colloids and animal flocks. Active phases are especially rich when…

Soft Condensed Matter · Physics 2024-07-15 Madhuvanthi Guruprasad Athani , Daniel A. Beller

The cornerstone of structural biology is the unique relationship between protein sequence and the 3D structure at equilibrium. Although intrinsically disordered proteins (IDPs) do not fold into a specific 3D structure, breaking this…

Active colloidal particles typically exhibit a pronounced affinity for accumulating and being captured at boundaries. Here, we engineer long-range repulsive interactions between colloids that self-propel under an electric field and…

Soft Condensed Matter · Physics 2025-01-03 Carolina van Baalen , Stefania Ketzetzi , Anushka Tintor , Lucio Isa

Self-assembly processes are widespread in nature, and lie at the heart of many biological and physical phenomena. The characteristics of self-assembly building blocks determine the structures that they form. Two crucial properties are the…

Soft Condensed Matter · Physics 2018-09-11 S. Tesoro , S. E. Ahnert , A. S. Leonard

Disordered systems subject to a fluctuating environment can self-organize into a complex history-dependent response, retaining a memory of the driving. In sheared amorphous solids, self-organization is established by the emergence of a…

Soft Condensed Matter · Physics 2026-01-08 Muhittin Mungan , Eric Clement , Damien Vandembroucq , Srikanth Sastry

We demonstrate that the active thermocapillary stresses induced by multiple microbubbles offer simple routes to directed self-assembly and complex but controllable micromanipulation of mesoscopic colloidal particles embedded in a liquid.…

Fluid Dynamics · Physics 2019-03-26 Subhrokoli Ghosh , Aritra Biswas , Basudev Roy , Ayan Banerjee

Polypeptides can self-assemble into hierarchically organized fibrils consisting of a stack of individually folded polypeptides driven together by hydrophobic interaction. Using a coarse grained model, we systematically studied this…

Soft Condensed Matter · Physics 2013-07-31 Ran Ni , Sanne Abeln , Marieke Schor , Martien A. Cohen Stuart , Peter G. Bolhuis

The contactless selective manipulation of individual objects at the microscale is powerfully enabled by acoustical tweezers based on acoustical vortices [Baudoin et al., Sci. Adv., 5:eaav1967 (2019)]. Nevertheless, the ability to assemble…

Applied Physics · Physics 2021-02-05 Zhixiong Gong , Michael Baudoin

Both biological and artificial self-assembly processes can take place by a range of different schemes, from the successive addition of identical building blocks, to hierarchical sequences of intermediates, all the way to the fully…

Soft Condensed Matter · Physics 2015-08-12 Jim Madge , Mark A. Miller

When a ribbon or tube is twisted far enough it forms buckles and wrinkles. Its new geometry can be strikingly ordered, or hopelessly disordered. Here we study this process in a tube with hybrid boundary conditions: one end a cylinder, and…

Soft Condensed Matter · Physics 2025-11-27 Pan Dong , Nathan C. Keim , Joseph D. Paulsen

Living cells dynamically modulate the local morphologies of their actin cytoskeletons to perform biological functions, including force transduction, intracellular transport, and cell division. A major challenge is to understand how diverse…

Biological Physics · Physics 2018-12-07 Simon L. Freedman , Glen M. Hocky , Shiladitya Banerjee , Aaron R. Dinner

Molecular simulations of the self-assembly of cone-shaped particles with specific, attractive interactions are performed. Upon cooling from random initial conditions, we find that the cones self assemble into clusters and that clusters…

Materials Science · Physics 2009-11-11 Ting Chen , Zhenli Zhang , Sharon C. Glotzer

We consider self-organization and memory formation in a mesoscopic model of an amorphous solid subject to a random shear strain protocol confined to a strain range $\pm \varepsilon_{\rm max}$. We develop proper read-out protocols to show…

Soft Condensed Matter · Physics 2025-06-03 Muhittin Mungan , Dheeraj Kumar , Sylvain Patinet , Damien Vandembroucq

Semiflexible polymers are ubiquitous in natural and artificial systems, where their intermediate rigidity gives rise to rich structural and dynamical behavior. Confinement plays a central role in these behaviors, as spatial restrictions can…

Soft Condensed Matter · Physics 2026-03-31 Nasir Amiri , Jonathan P. Singer , Xin Yong

We address the inverse problem of designing isotropic pairwise particle interaction potentials that lead to the formation of a desired lattice when a system of particles is cooled. The design problem is motivated by the desire to produce…

Adaptation and Self-Organizing Systems · Physics 2009-05-13 Philip du Toit , Katalin Grubits , Jerrold Marsden , Sorin Costiner

Molecular self-assembly on surfaces constitutes a powerful method for creating tailor-made surface structures with dedicated functionalities. Varying the intermolecular interactions allows for tuning the resulting molecular structures in a…

Mesoscale and Nanoscale Physics · Physics 2020-07-24 Christoph Schiel , Maximilian Vogtland , Ralf Bechstein , Angelika Kühnle , Philipp Maass

Order and alignment are ubiquitous in growing colonies of rod-shaped bacteria due to the nematic properties of the constituent particles. These effects are the result of the active stresses generated by growth, passive mechanical…

Soft Condensed Matter · Physics 2022-07-07 Jonas Isensee , Lukas Hupe , Ramin Golestanian , Philip Bittihn

Colloidal molecules are designed to mimic their molecular analogues through their anisotropic shape and interactions. However, current experimental realizations are missing the structural flexibility present in real molecules thereby…

A lattice model with soft repulsion followed by attraction is developed for a monolayer of hybrid core-shell particles self-assembling at an interface. The model is solved exactly in one dimension. One, two or three periodic structures and…

Soft Condensed Matter · Physics 2017-01-03 Alina Ciach , Jakub Pekalski

Robust self-organization of subcellular structures is a key principle governing the dynamics and evolution of cellular life. In fission yeast cells undergoing division, the mitotic spindle spontaneously emerges from the interaction of…

Soft Condensed Matter · Physics 2024-06-03 David A. Head , W. J. Briels , Gerhard Gompper
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