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Software is a central part of modern science, and knowledge of its use is crucial for the scientific community with respect to reproducibility and attribution of its developers. Several studies have investigated in-text mentions of software…

Digital Libraries · Computer Science 2024-04-19 David Schindler , Tazin Hossain , Sascha Spors , Frank Krüger

Software citation contributes to achieving software sustainability in two ways: It provides an impact metric to incentivize stakeholders to make software sustainable. It also provides references to software used in research, which can be…

Software Engineering · Computer Science 2021-05-18 Stephan Druskat , Daniel S. Katz , Ilian T. Todorov

In most fields, computational models and data analysis have become a significant part of how research is performed, in addition to the more traditional theory and experiment. Mathematics is no exception to this trend. While the system of…

Computers and Society · Computer Science 2018-07-24 Daniel S. Katz , Neil P. Chue Hong

Under the data-driven research paradigm, research software has come to play crucial roles in nearly every stage of scientific inquiry. Scholars are advocating for the formal citation of software in academic publications, treating it on par…

Digital Libraries · Computer Science 2023-07-19 Yuzhuo Wang , Kai Li

Software is foundationally important to scientific and social progress, however, traditional acknowledgment of the use of others' work has not adapted in step with the rapid development and use of software in research. This report outlines…

Digital Libraries · Computer Science 2023-02-16 Daina Bouquin , Ana Trisovic , Oliver Bertuch , Elena Colón-Marrero

A growing number of largely uncoordinated initiatives focus on research software sustainability. A comprehensive mapping of the research software sustainability space can help identify gaps in their efforts, track results, and avoid…

Software Engineering · Computer Science 2025-07-01 Stephan Druskat , Daniel S. Katz

In this article, we present the challenge of software citation as a method to ensure credit for and identification, discovery, and reuse of software in scientific and engineering research. We discuss related work and key challenges/research…

Computers and Society · Computer Science 2016-11-04 Kyle E. Niemeyer , Arfon M. Smith , Daniel S. Katz

Software now lies at the heart of scholarly research. Here we argue that as well as being important from a methodological perspective, software should, in many instances, be recognised as an output of research, equivalent to an academic…

Computers and Society · Computer Science 2021-12-23 Caroline Jay , Robert Haines , Daniel S. Katz

Software is crucial for the advancement of astronomy especially in the context of rapidly growing datasets that increasingly require algorithm and pipeline development to process the data and produce results. However, software has not…

Instrumentation and Methods for Astrophysics · Physics 2025-09-19 Tom Wagg , Floor S. Broekgaarden

The main output of the FORCE11 Software Citation working group (https://www.force11.org/group/software-citation-working-group) was a paper on software citation principles (https://doi.org/10.7717/peerj-cs.86) published in September 2016.…

Datasets collecting software mentions from scholarly publications can potentially be used for research into the software that has been used in the published research, as well as into the practice of software citation. Recently, new software…

Software Engineering · Computer Science 2024-02-23 Stephan Druskat , Neil P. Chue Hong , Sammie Buzzard , Olexandr Konovalov , Patrick Kornek

Modern research heavily relies on software. A significant challenge researchers face is understanding the complex software used in specific research fields. We target two scenarios in this context, namely long onboarding times for newcomers…

Software Engineering · Computer Science 2026-04-14 Adrian Bajraktari , Andreas Vogelsang

Modern science is relying on software more than ever. The behavior and outcomes of this software shape the scientific and public discourse on important topics like climate change, economic growth, or the spread of infections. Most…

Software Engineering · Computer Science 2025-01-09 Adrian Bajraktari , Michelle Binder , Andreas Vogelsang

Reference management software is a well-known tool for scientific research work. Since the 1980s, it has been the subject of reviews and evaluations in library and information science literature. This paper presents a systematic review of…

Digital Libraries · Computer Science 2016-01-22 Jesús Tramullas , Ana I. Sánchez-Casabón , Piedad Garrido-Picazo

In many complex networks the vertices are ordered in time, and edges represent causal connections. We propose methods of analysing such directed acyclic graphs taking into account the constraints of causality and highlighting the causal…

Physics and Society · Physics 2015-07-07 James R. Clough , Jamie Gollings , Tamar V. Loach , Tim S. Evans

The rise of software as a research object is mirrored in the increasing interests towards quantitative studies of scientific software. However, due to the inconsistent practice of citing software, most of the existing studies analyzing the…

Digital Libraries · Computer Science 2019-03-01 Kai Li , Pei-Ying Chen , Erjia Yan

Software systems are composed of many interacting elements. A natural way to abstract over software systems is to model them as graphs. In this paper we consider software dependency graphs of object-oriented software and we study one…

Software Engineering · Computer Science 2017-04-11 Vincenzo Musco , Martin Monperrus , Philippe Preux

Citations are the cornerstone of knowledge propagation and the primary means of assessing the quality of research, as well as directing investments in science. Science is increasingly becoming "data-intensive", where large volumes of data…

Digital Libraries · Computer Science 2017-09-28 Gianmaria Silvello

This paper proposes a software repository model together with associated tooling and consists of several complex, open-source GUI driven applications ready to be used in empirical software research. We start by providing the rationale for…

Software Engineering · Computer Science 2017-02-28 Arthur-Jozsef Molnar

Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu
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