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We study information theoretic methods for ranking biomarkers. In clinical trials there are two, closely related, types of biomarkers: predictive and prognostic, and disentangling them is a key challenge. Our first step is to phrase…

Machine Learning · Statistics 2016-12-06 Konstantinos Sechidis , Emily Turner , Paul D. Metcalfe , James Weatherall , Gavin Brown

Target identification for tractography studies requires solid anatomical knowledge validated by an extensive literature review across species for each seed structure to be studied. Manual literature review to identify targets for a given…

Improving the precision of heart diseases detection has been investigated by many researchers in the literature. Such improvement induced by the overwhelming health care expenditures and erroneous diagnosis. As a result, various…

Computers and Society · Computer Science 2018-03-29 Israa Ahmed Zriqat , Ahmad Mousa Altamimi , Mohammad Azzeh

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Background Medical and life science research generates millions of publications, and it is a great challenge for researchers to utilize this information in full since its scale and complexity greatly surpasses human reading capabilities.…

Motivation: Microarray data has been recently been shown to be efficacious in distinguishing closely related cell types that often appear in the diagnosis of cancer. It is useful to determine the minimum number of genes needed to do such a…

Biological Physics · Physics 2007-05-23 J. M. Deutsch

As the amount of online text increases, the demand for text classification to aid the analysis and management of text is increasing. Text is cheap, but information, in the form of knowing what classes a text belongs to, is expensive.…

Machine Learning · Computer Science 2010-09-27 Chowdhury Mofizur Rahman , Ferdous Ahmed Sohel , Parvez Naushad , S. M. Kamruzzaman

The amount of scientific papers published every day is daunting and constantly increasing. Keeping up with literature represents a challenge. If one wants to start exploring new topics it is hard to have a big picture without reading lots…

Information Retrieval · Computer Science 2020-11-10 Alberto Calderone

Overall, the two main contributions of this work include the application of sentence simplification to association extraction as described above, and the use of distributional semantics for concept extraction. The proposed work on concept…

Computation and Language · Computer Science 2011-09-13 Siddhartha Jonnalagadda

Pairwise alignment of DNA sequencing data is a ubiquitous task in bioinformatics and typically represents a heavy computational burden. State-of-the-art approaches to speed up this task use hashing to identify short segments (k-mers) that…

Machine Learning · Computer Science 2021-02-16 Govinda M. Kamath , Tavor Z. Baharav , Ilan Shomorony

This paper deals with the binary classification task when the target class has the lower probability of occurrence. In such situation, it is not possible to build a powerful classifier by using standard methods such as logistic regression,…

Machine Learning · Statistics 2015-02-26 Cheikh Ndour , Aliou Diop , Simplice Dossou-Gbété

Text mining is about looking for patterns in natural language text, and may be defined as the process of analyzing text to extract information from it for particular purposes. In previous work, we claimed that compression is a key…

Digital Libraries · Computer Science 2007-05-23 Stuart Yeates , David Bainbridge , Ian H. Witten

Health related social media mining is a valuable apparatus for the early recognition of the diverse antagonistic medicinal conditions. Mostly, the existing methods are based on machine learning with knowledge-based learning. This working…

Computation and Language · Computer Science 2018-04-13 Vinayakumar R , Barathi Ganesh HB , Anand Kumar M , Soman KP

Many practical applications of AI in medicine consist of semi-supervised discovery: The investigator aims to identify features of interest at a resolution more fine-grained than that of the available human labels. This is often the scenario…

Computation and Language · Computer Science 2020-04-08 Allen Schmaltz , Andrew Beam

In this paper, we present a fast and strong neural approach for general purpose text matching applications. We explore what is sufficient to build a fast and well-performed text matching model and propose to keep three key features…

Computation and Language · Computer Science 2019-08-02 Runqi Yang , Jianhai Zhang , Xing Gao , Feng Ji , Haiqing Chen

All over the world, future parents are facing the task of finding a suitable given name for their child. This choice is influenced by different factors, such as the social context, language, cultural background and especially personal…

Information Retrieval · Computer Science 2013-02-20 Folke Mitzlaff , Gerd Stumme

Medical entity linking is the task of identifying and standardizing medical concepts referred to in an unstructured text. Most of the existing methods adopt a three-step approach of (1) detecting mentions, (2) generating a list of candidate…

Computation and Language · Computer Science 2021-08-24 Shikhar Vashishth , Denis Newman-Griffis , Rishabh Joshi , Ritam Dutt , Carolyn Rose

Text preprocessing is an essential step in text mining. Removing words that can negatively impact the quality of prediction algorithms or are not informative enough is a crucial storage-saving technique in text indexing and results in…

Information Retrieval · Computer Science 2020-12-07 Farah Alshanik , Amy Apon , Alexander Herzog , Ilya Safro , Justin Sybrandt

Text summarization in medicine can help doctors for reducing the time to access important information from countless documents. The paper offers a supervised extractive summarization method based on conditional generative adversarial…

Computation and Language · Computer Science 2021-10-25 Seyed Vahid Moravvej , Abdolreza Mirzaei , Mehran Safayani

Now a day's, search engines are been most widely used for extracting information's from various resources throughout the world. Where, majority of searches lies in the field of biomedical for retrieving related documents from various…

Information Retrieval · Computer Science 2009-12-14 Jayanthi Manicassamy , P. Dhavachelvan