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Academic trade requires juggling multiple variants of the same content published in different formats: manuscripts, presentations, posters and computational notebooks. The need to track versions to accommodate for the…

Programming Languages · Computer Science 2021-07-15 Kacper Sokol , Peter Flach

We need ways to improve the code quality. Programmers have different level of tenure and experience. Standard and programming languages change and we are forced to re-use legacy code with minimum revision. Programmers develop their habits…

More than ninety percent of published Jupyter notebooks do not state dependencies on external packages. This makes them non-executable and thus hinders reproducibility of scientific results. We present SnifferDog, an approach that 1)…

Software Engineering · Computer Science 2021-03-05 Jiawei Wang , Li Li , Andreas Zeller

Open-science collaboration using Jupyter Notebooks may expose expensively trained AI models, high-performance computing resources, and training data to security vulnerabilities, such as unauthorized access, accidental deletion, or misuse.…

Cryptography and Security · Computer Science 2024-10-01 Phuong Cao

In recent decades the analysis of data has become increasingly computational. Correspondingly, this has changed how scientific and statistical work is shared. For example, it is now commonplace for underlying analysis code and data to be…

Other Statistics · Statistics 2021-08-05 Gregory J. Hunt , Johann A. Gagnon-Bartsch

At present, code recommendation tools have gained greater importance to many software developers in various areas of expertise. Having code recommendation tools has enabled better productivity and performance in developing the code in…

The ubiquity of computation in modern scientific research inflicts new challenges for reproducibility. While most journals now require code and data be made available, the standards for organization, annotation, and validation remain lax,…

Other Quantitative Biology · Quantitative Biology 2022-10-07 Griffin Chure

This paper proposes the use of notebooks for the design documentation and tool interaction in the rigorous design of embedded systems. Conventionally, a notebook is a sequence of cells alternating between (textual) code and prose to form a…

Software Engineering · Computer Science 2018-11-28 Spencer Park , Emil Sekerinski

In experimental physics, lab notebooks play an essential role in the research process. For all of the ubiquity of lab notebooks, little formal attention has been paid to addressing what is considered `best practice' for scientific…

Physics Education · Physics 2016-12-21 Jacob T. Stanley , H. J. Lewandowski

As access to the internet has become increasingly ubiquitous, along with the reliability and speed of internet providers, so too has the implementation of internet-based learning tools. These tools provide students opportunities to do…

Computers and Society · Computer Science 2024-09-20 Peter Berg , Zachary Kelly

Computational notebooks, such as Jupyter notebooks, are interactive computing environments that are ubiquitous among data scientists to perform data wrangling and analytic tasks. To measure the performance of AI pair programmers that…

It is important for researchers to understand precisely how data scientists turn raw data into insights, including typical programming patterns, workflow, and methodology. This paper contributes a novel system, called DataInquirer, that…

Human-Computer Interaction · Computer Science 2024-05-29 Jinjin Zhao , Avidgor Gal , Sanjay Krishnan

The reproduction and replication of reported scientific results is a hot topic within the academic community. The retraction of numerous studies from a wide range of disciplines, from climate science to bioscience, has drawn the focus of…

Computational Engineering, Finance, and Science · Computer Science 2014-10-15 Tom Crick , Benjamin A. Hall , Samin Ishtiaq , Kenji Takeda

The large amount of cosmological data already available (and in the near future) makes necessary the development of efficient numerical codes. Many software products have been implemented to perform cosmological analyses considering one or…

Cosmology and Nongalactic Astrophysics · Physics 2022-03-16 Sandro Dias Pinto Vitenti , Mariana Penna-Lima

Computational notebooks have become the tool of choice for many data scientists and practitioners for performing analyses and disseminating results. Despite their increasing popularity, the research community cannot yet count on a large,…

Databases · Computer Science 2021-06-01 Luigi Quaranta , Fabio Calefato , Filippo Lanubile

Quantum computers are becoming more mainstream. As more programmers are starting to look at writing quantum programs, they need to test and debug their code. In this paper, we discuss various use-cases for quantum computers, either…

Software Engineering · Computer Science 2021-03-17 Andriy Miranskyy , Lei Zhang , Javad Doliskani

Jupyter Notebook is an interactive development environment commonly used for rapid experimentation of machine learning (ML) solutions. Describing the ML activities performed along code cells improves the readability and understanding of…

Software Engineering · Computer Science 2024-03-13 Miguel Perez , Selin Aydin , Horst Lichter

The advent of increasingly large and complex datasets has fundamentally altered the way that scientists conduct astronomy research. The need to work closely to the data has motivated the creation of online science platforms, which include a…

Instrumentation and Methods for Astrophysics · Physics 2021-04-15 Stéphanie Juneau , Knut A. G. Olsen , Robert Nikutta , Alice Jacques , Stephen Bailey

Code review is a widely-used practice in software development companies to identify defects. Hence, code review has been included in many software engineering curricula at universities worldwide. However, teaching code review is still a…

Software Engineering · Computer Science 2021-02-04 Chun Yong Chong , Patanamon Thongtanunam , Chakkrit Tantithamthavorn

The transition from AI/ML models to production-ready AI-based systems is a challenge for both data scientists and software engineers. In this paper, we report the results of a workshop conducted in a consulting company to understand how…

Software Engineering · Computer Science 2021-06-01 Filippo Lanubile , Fabio Calefato , Luigi Quaranta , Maddalena Amoruso , Fabio Fumarola , Michele Filannino