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Molecular geometry prediction of flexible molecules, or conformer search, is a long-standing challenge in computational chemistry. This task is of great importance for predicting structure-activity relationships for a wide variety of…

Machine Learning · Computer Science 2020-06-15 Tarun Gogineni , Ziping Xu , Exequiel Punzalan , Runxuan Jiang , Joshua Kammeraad , Ambuj Tewari , Paul Zimmerman

Molecular Dynamics (MD) simulation is a powerful tool for understanding the dynamics and structure of matter. Since the resolution of MD is atomic-scale, achieving long time-scale simulations with femtosecond integration is very expensive.…

Machine Learning · Computer Science 2022-04-27 Zijie Li , Kazem Meidani , Prakarsh Yadav , Amir Barati Farimani

Intelligent biological systems are characterized by their embodiment in a complex environment and the intimate interplay between their nervous systems and the nonlinear mechanical properties of their bodies. This coordination, in which the…

Machine Learning · Computer Science 2023-02-02 Deniz Oktay , Mehran Mirramezani , Eder Medina , Ryan P. Adams

Geometric deep learning (GDL) has demonstrated huge power and enormous potential in molecular data analysis. However, a great challenge still remains for highly efficient molecular representations. Currently, covalent-bond-based molecular…

Computational Physics · Physics 2023-06-28 Cong Shen , Jiawei Luo , Kelin Xia

Neural network-based algorithms have garnered considerable attention in condensed matter physics for their ability to learn complex patterns from very high dimensional data sets towards classifying complex long-range patterns of…

Quantum Physics · Physics 2021-01-01 Ian MacCormack , Conor Delaney , Alexey Galda , Nidhi Aggarwal , Prineha Narang

Graph neural networks (GNNs) have demonstrated promising performance across various chemistry-related tasks. However, conventional graphs only model the pairwise connectivity in molecules, failing to adequately represent higher-order…

Chemical Physics · Physics 2023-12-22 Junwu Chen , Philippe Schwaller

Realistic models of physical world rely on differentiable symmetries that, in turn, correspond to conservation laws. Recent works on Lagrangian and Hamiltonian neural networks show that the underlying symmetries of a system can be easily…

Machine Learning · Computer Science 2021-10-13 Ravinder Bhattoo , Sayan Ranu , N. M. Anoop Krishnan

Diffractive neural networks hold great promise for applications requiring intensive computational processing. Considerable attention has focused on diffractive networks for either spatially coherent or spatially incoherent illumination.…

Optics · Physics 2025-03-25 Matan Kleiner , Lior Michaeli , Tomer Michaeli

Designing machine learning architectures for processing neural networks in their raw weight matrix form is a newly introduced research direction. Unfortunately, the unique symmetry structure of deep weight spaces makes this design very…

Machine Learning · Computer Science 2023-06-02 Aviv Navon , Aviv Shamsian , Idan Achituve , Ethan Fetaya , Gal Chechik , Haggai Maron

Deep Learning neural networks are pervasive, but traditional computer architectures are reaching the limits of being able to efficiently execute them for the large workloads of today. They are limited by the von Neumann bottleneck: the high…

Emerging Technologies · Computer Science 2022-06-22 Wilfried Haensch , Anand Raghunathan , Kaushik Roy , Bhaswar Chakrabarti , Charudatta M. Phatak , Cheng Wang , Supratik Guha

Despite their success, modern convolutional neural networks (CNNs) exhibit fundamental limitations, including data inefficiency, poor out-of-distribution generalization, and vulnerability to adversarial perturbations. These shortcomings can…

Neural and Evolutionary Computing · Computer Science 2025-11-25 Brennen A. Hill , Zhang Xinyu , Timothy Putra Prasetio

Perceptual learning enables humans to recognize and represent stimuli invariant to various transformations and build a consistent representation of the self and physical world. Such representations preserve the invariant physical relations…

Neural and Evolutionary Computing · Computer Science 2020-07-02 Du Xiaorui , Yavuzhan Erdem , Immanuel Schweizer , Cristian Axenie

Deep neural networks have become a pervasive tool in science and engineering. However, modern deep neural networks' growing energy requirements now increasingly limit their scaling and broader use. We propose a radical alternative for…

Machine Learning · Computer Science 2022-01-31 Logan G. Wright , Tatsuhiro Onodera , Martin M. Stein , Tianyu Wang , Darren T. Schachter , Zoey Hu , Peter L. McMahon

Machine learning techniques are essential tools to compute efficient, yet accurate, force fields for atomistic simulations. This approach has recently been extended to incorporate quantum computational methods, making use of variational…

Deep neural networks can represent very different sorts of functions, including complex quantum many-body states. Tensor networks can also represent these states, have more structure and are easier to optimize. However, they can be…

Strongly Correlated Electrons · Physics 2026-04-22 Miha Srdinšek , Xavier Waintal

Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a specific target within a background of various similar…

Biomolecules · Quantitative Biology 2010-07-27 Yonatan Savir , Tsvi Tlusty

The dynamics in the photosphere is governed by the multi-scale turbulent convection termed as granulation and supergranulation. It is important to derive 3-dimensional velocity vectors to understand the nature of the turbulent convection.…

Solar and Stellar Astrophysics · Physics 2022-03-14 Ryohtaroh T. Ishikawa , Motoki Nakata , Yukio Katsukawa , Youhei Masada , Tino L. Riethmüller

Machine learning techniques including neural networks are popular tools for materials and chemical scientists with applications that may provide viable alternative methods in the analysis of structure and energetics of systems ranging from…

Statistical Mechanics · Physics 2022-03-02 James Andrews , Olga Gkountouna , Estela Blaisten-Barojas

Determining the structure and following the structural evolution of molecules undergoing chemical reactions is one of the key goals of ultrafast molecular physics and chemistry. Recently, Coulomb explosion imaging has emerged as a promising…

Deep learning has led to a paradigm shift in artificial intelligence, including web, text and image search, speech recognition, as well as bioinformatics, with growing impact in chemical physics. Machine learning in general and deep…

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