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Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional data-driven methods face challenges in capturing inherently…

Machine Learning · Computer Science 2025-04-08 Runlong Yu , Shengyu Chen , Yiqun Xie , Huaxiu Yao , Jared Willard , Xiaowei Jia

Domain experts can play a crucial role in guiding data scientists to optimize machine learning models while ensuring contextual relevance for downstream use. However, in current workflows, such collaboration is challenging due to differing…

Human-Computer Interaction · Computer Science 2024-05-06 Jasmine Y. Shih , Vishal Mohanty , Yannis Katsis , Hariharan Subramonyam

High-performance computing systems (HPC) provide powerful capabilities for modeling, simulation, and data analytics for a broad class of computational problems. They enable extreme performance of the order of quadrillion floating-point…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-01 Saurabh Hukerikar , Christian Engelmann

Many science advances have been possible thanks to the use of research software, which has become essential to advancing virtually every Science, Technology, Engineering and Mathematics (STEM) discipline and many non-STEM disciplines…

Software Engineering · Computer Science 2019-02-26 Daniel S. Katz , Patrick Aerts , Neil P. Chue Hong , Anshu Dubey , Sandra Gesing , Henry J. Neeman , David E. Pearah

We introduce Metatheory.jl: a lightweight and performant general purpose symbolics and metaprogramming framework meant to simplify the act of writing complex Julia metaprograms and to significantly enhance Julia with a native term rewriting…

Programming Languages · Computer Science 2021-04-14 Alessandro Cheli

The notion of complex systems is common to many domains, from Biology to Economy, Computer Science, Physics, etc. Often, these systems are made of sets of entities moving in an evolving environment. One of their major characteristics is the…

Mathematical Software · Computer Science 2008-12-18 Yoann Pigné , Antoine Dutot , Frédéric Guinand , Damien Olivier

With the rapid advancement of intelligent technologies, collaborative frameworks integrating large and small models have emerged as a promising approach for enhancing industrial maintenance. However, several challenges persist, including…

Systems and Control · Electrical Eng. & Systems 2025-06-09 Xiaoyi Yuan , Qiming Huang , Mingqing Guo , Huiming Ma , Ming Xu , Zeyi Liu , Xiao He

Datasets encountered in scientific and engineering applications appear in complex formats (e.g., images, multivariate time series, molecules, video, text strings, networks). Graph theory provides a unifying framework to model such datasets…

Mathematical Software · Computer Science 2025-01-09 David L Cole , Victor M Zavala

The emergence of large-scale AI models, like GPT-4, has significantly impacted academia and industry, driving the demand for high-performance computing (HPC) to accelerate workloads. To address this, we present HPCClusterScape, a…

Human-Computer Interaction · Computer Science 2023-12-22 Heungseok Park , Aeree Cho , Hyojun Jeon , Hayoung Lee , Youngil Yang , Sungjae Lee , Heungsub Lee , Jaegul Choo

Understanding the geographic distribution of species is a key concern in conservation. By pairing species occurrences with environmental features, researchers can model the relationship between an environment and the species which may be…

Computer Vision and Pattern Recognition · Computer Science 2020-04-10 Elijah Cole , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Christophe Botella , Dan Morris , Nebojsa Jojic , Pierre Bonnet , Alexis Joly

Scientific legacy code in MATLAB/Octave not compatible with modernization of research workflows is vastly abundant throughout academic community. Performance of non-vectorized code written in MATLAB/Octave represents a major burden. A new…

Software Engineering · Computer Science 2017-01-10 Vardan Andriasyan , Yauhen Yakimovich , Artur Yakimovich

The evergrowing computational complexity of High Performance Computing applications is often met with an horizontal scalling of computing systems. Colaterally, each added node risks being a single point of failure to parallel programs,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-04 Marcos Irigoyen , Carla Santana , Ramon C. F Araújo , Samuel Xavier-de-Souza

Subseasonal forecasting, which is pivotal for agriculture, water resource management, and early warning of disasters, faces challenges due to the chaotic nature of the atmosphere. Recent advances in machine learning (ML) have revolutionized…

Machine Learning · Computer Science 2024-02-06 Shan Zhao , Zhitong Xiong , Xiao Xiang Zhu

Energy system models are increasingly employed to guide long-term planning in multi-sectoral environments where decisions span electricity, heat, transport, land use, and industry. While these models provide rigorous quantitative insights,…

Machine Learning · Computer Science 2025-12-02 Ali Forootani , Mohammad Sadr , Danial Esmaeili Aliabadi , Daniela Thraen

The GRAPE$.$jl package (https://github.com/JuliaQuantumControl/GRAPE.jl) implements Gradient Ascent Pulse Engineering, a widely used method of quantum optimal control. Its purpose is to find controls that steer a quantum system in a…

Ecological networks describe the interactions between different species, informing us of how they rely on one another for food, pollination and survival. If a species in an ecosystem is under threat of extinction, it can affect other…

Populations and Evolution · Quantitative Biology 2023-07-06 Chris Jones , Damaris Zurell , Karoline Wiesner

Wildlife monitoring is crucial to nature conservation and has been done by manual observations from motion-triggered camera traps deployed in the field. Widespread adoption of such in-situ sensors has resulted in unprecedented data volumes…

Computer Vision and Pattern Recognition · Computer Science 2020-09-25 Sayali Kulkarni , Tomer Gadot , Chen Luo , Tanya Birch , Eric Fegraus

Decision making in large scale urban environments is critical for many applications involving continuous distribution of resources and utilization of infrastructure, such as ambient lighting control and traffic management. Traditional…

Nowadays the number of available processing cores within computing nodes which are used in recent clustered environments, are growing up with a rapid rate. Despite this trend, the number of available network interfaces in such computing…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-07-13 Mohsen Soryani , Morteza Analoui , Ghobad Zarrinchian

As astronomical data grows in volume and complexity, the scalability of analysis software becomes increasingly important. At the same time, astrophysics analysis software relies heavily on open-source contributions, so languages and tools…

Instrumentation and Methods for Astrophysics · Physics 2024-02-01 Edward Berman , Jacqueline McCleary