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The Julia programming language has gained acceptance within the High-Performance Computing (HPC) community due to its ability to tackle two-language problem: Julia code feels as high-level as Python but allows developers to tune it to…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-17 Sergio Sanchez-Ramirez , Mosè Giordano

Predictions of biodiversity trajectories under climate change are crucial in order to act effectively in maintaining the diversity of species. In many ecological applications, future predictions are made under various global warming…

Quantitative Methods · Quantitative Biology 2022-07-19 Matthew Davidow , Cory Merow , Judy Che-Castaldo , Toryn Schafer , Marie-Christine Duker , Derek Corcoran , David Matteson

1. Joint Species Distribution models (JSDMs) explain spatial variation in community composition by contributions of the environment, biotic associations, and possibly spatially structured residual covariance. They show great promise as a…

Quantitative Methods · Quantitative Biology 2023-03-28 Maximilian Pichler , Florian Hartig

The potential effects of conservation actions on threatened species can be predicted using ensemble ecosystem models by forecasting populations with and without intervention. These model ensembles commonly assume stable coexistence of…

Populations and Evolution · Quantitative Biology 2024-03-22 Sarah A. Vollert , Christopher Drovandi , Matthew P. Adams

Dynamic languages have become popular for scientific computing. They are generally considered highly productive, but lacking in performance. This paper presents Julia, a new dynamic language for technical computing, designed for performance…

Programming Languages · Computer Science 2012-09-25 Jeff Bezanson , Stefan Karpinski , Viral B. Shah , Alan Edelman

1. Many ecological decisions are slowed by the gap between collecting and analysing biodiversity data. Edge computing moves processing closer to the sensor, with edge artificial intelligence (AI) enabling on-device inference, reducing…

Computers and Society · Computer Science 2026-02-17 Aude Vuilliomenet , Kate E. Jones , Duncan Wilson

In this paper we present GridapTopOpt, an extendable framework for level set-based topology optimisation that can be readily distributed across a personal computer or high-performance computing cluster. The package is written in Julia and…

Mathematical Software · Computer Science 2026-01-26 Zachary J. Wegert , Jordi Manyer , Connor Mallon , Santiago Badia , Vivien J. Challis

In the realm of scientific computing, both Julia and Python have established themselves as powerful tools. Within the context of High Energy Physics (HEP) data analysis, Python has been traditionally favored, yet there exists a compelling…

Programming Languages · Computer Science 2024-04-30 Ianna Osborne , Jim Pivarski , Jerry Ling

Agent-based models capture heterogeneity among individuals in a population and are widely used in studies of multi-cellular systems, disease, epidemics and demography to name a few. However, existing frameworks consider discrete time-step…

Populations and Evolution · Quantitative Biology 2024-10-03 Paul Piho , Philipp Thomas

Spatial ecological networks are widely used to model interactions between georeferenced biological entities (e.g., populations or communities). The analysis of such data often leads to a two-step approach where groups containing similar…

Applications · Statistics 2014-02-24 Vincent Miele , Franck Picard , Stéphane Dray

Real-world complex networks are usually being modeled as graphs. The concept of graphs assumes that the relations within the network are binary (for instance, between pairs of nodes); however, this is not always true for many real-life…

Social and Information Networks · Computer Science 2020-05-06 Alessia Antelmi , Gennaro Cordasco , Bogumił Kamiński , Paweł Prałat , Vittorio Scarano , Carmine Spagnuolo , Przemyslaw Szufel

In recent decades, the causes and consequences of climate change have accelerated, affecting our planet on an unprecedented scale. This change is closely tied to the ways in which humans alter their surroundings. As our actions continue to…

Computer Vision and Pattern Recognition · Computer Science 2024-06-28 Burak Ekim , Michael Schmitt

The integration of converter-interfaced generation (CIG) from renewable energy sources poses challenges to the stability and transient behavior of electric power systems. Understanding the dynamic behavior of low-inertia power systems is…

Systems and Control · Electrical Eng. & Systems 2020-03-09 Rodrigo Henriquez-Auba , Jose D. Lara , Ciaran Roberts , Nathan Pallo , Duncan S. Callaway

In this article, we propose an interval constraint programming method for globally solving catalog-based categorical optimization problems. It supports catalogs of arbitrary size and properties of arbitrary dimension, and does not require…

Optimization and Control · Mathematics 2024-01-23 Charlie Vanaret

Inspired by biological and cultural evolution, there have been many attempts to explore and elucidate the necessary conditions for open-endedness in artificial intelligence and artificial life. Using a continuous cellular automata called…

Neural and Evolutionary Computing · Computer Science 2023-04-13 Bert Wang-Chak Chan

Predicting the degradation processes of molecules over long timescales is a key aspect of industrial materials design. However, it is made computationally challenging by the need to construct large networks of chemical reactions that are…

Chemical Physics · Physics 2025-05-02 Joe Gilkes , Mark Storr , Reinhard J. Maurer , Scott Habershon

Large Language Models (LLMs) enable real-time function calling in edge AI systems but introduce significant computational overhead, leading to high power consumption and carbon emissions. Existing methods optimize for performance while…

As multiple crises threaten the sustainability of our societies and pose at risk the planetary boundaries, complex challenges require timely, updated, and usable information. Natural-language processing (NLP) tools enhance and expand data…

Computers and Society · Computer Science 2025-02-05 Francesca Larosa , Sergio Hoyas , H. Alberto Conejero , Javier Garcia-Martinez , Francesco Fuso Nerini , Ricardo Vinuesa

The design of efficient and generic algorithms for solving combinatorial optimization problems has been an active field of research for many years. Standard exact solving approaches are based on a clever and complete enumeration of the…

Machine Learning · Computer Science 2021-04-21 Félix Chalumeau , Ilan Coulon , Quentin Cappart , Louis-Martin Rousseau

The rapid rise of scientific machine learning (SciML) has expanded the role of differentiable modeling, surrogate modeling, and data-driven constitutive laws in large-scale simulation. The JAX framework provides an attractive environment…

Mathematical Software · Computer Science 2026-04-27 Alberto Cattaneo , M Keith Ballard , Robert M. Kirby , Varun Shankar