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In many fields, researchers are interested in large and complex biological processes. Two important examples are gene expression and DNA methylation in genetics. One key problem is to identify aberrant patterns of these processes and…

Applications · Statistics 2012-10-03 Matthias Kormaksson , James G. Booth , Maria E. Figueroa , Ari Melnick

Unsupervised learning of high-dimensional data is challenging due to irrelevant or noisy features obscuring underlying structures. It's common that only a few features, called the influential features, meaningfully define the clusters.…

Machine Learning · Computer Science 2026-03-26 Chen Ma , Wanjie Wang , Shuhao Fan

Often the best performing deep neural models are ensembles of multiple base-level networks. Unfortunately, the space required to store these many networks, and the time required to execute them at test-time, prohibits their use in…

Computer Vision and Pattern Recognition · Computer Science 2019-07-26 Zhiqiang Shen , Zhankui He , Xiangyang Xue

Detecting Out-of-Distribution (OOD) samples in real world visual applications like classification or object detection has become a necessary precondition in today's deployment of Deep Learning systems. Many techniques have been proposed, of…

Computer Vision and Pattern Recognition · Computer Science 2022-08-24 Abhishek Joshi , Sathish Chalasani , Kiran Nanjunda Iyer

Deep Metric Learning (DML) methods have been proven relevant for visual similarity learning. However, they sometimes lack generalization properties because they are trained often using an inappropriate sample selection strategy or due to…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Jorge Gonzalez-Zapata , Ivan Reyes-Amezcua , Daniel Flores-Araiza , Mauricio Mendez-Ruiz , Gilberto Ochoa-Ruiz , Andres Mendez-Vazquez

Current deep learning classifiers, carry out supervised learning and store class discriminatory information in a set of shared network weights. These weights cannot be easily altered to incrementally learn additional classes, since the…

Computer Vision and Pattern Recognition · Computer Science 2022-12-02 Penny Johnston , Keiller Nogueira , Kevin Swingler

Clustering is one of the most fundamental tasks in machine learning. Recently, deep clustering has become a major trend in clustering techniques. Representation learning often plays an important role in the effectiveness of deep clustering,…

Machine Learning · Computer Science 2021-06-02 Yaling Tao , Kentaro Takagi , Kouta Nakata

The availability of large labeled datasets is the key component for the success of deep learning. However, annotating labels on large datasets is generally time-consuming and expensive. Active learning is a research area that addresses the…

Computer Vision and Pattern Recognition · Computer Science 2022-07-26 Felix Buchert , Nassir Navab , Seong Tae Kim

Although more layers and more parameters generally improve the accuracy of the models, such big models generally have high computational complexity and require big memory, which exceed the capacity of small devices for inference and incurs…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-15 Ji Liu , Daxiang Dong , Xi Wang , An Qin , Xingjian Li , Patrick Valduriez , Dejing Dou , Dianhai Yu

Deep neural networks have shown the ability to extract universal feature representations from data such as images and text that have been useful for a variety of learning tasks. However, the fruits of representation learning have yet to be…

Machine Learning · Computer Science 2023-03-28 Liam Collins , Hamed Hassani , Aryan Mokhtari , Sanjay Shakkottai

The performance of Large Language Models (LLMs) on natural language tasks can be improved through both supervised fine-tuning (SFT) and in-context learning (ICL), which operate via distinct mechanisms. Supervised fine-tuning updates the…

Computation and Language · Computer Science 2025-05-21 Saahith Janapati , Yangfeng Ji

Representation learning has been evolving from traditional supervised training to Contrastive Learning (CL) and Masked Image Modeling (MIM). Previous works have demonstrated their pros and cons in specific scenarios, i.e., CL and supervised…

Computer Vision and Pattern Recognition · Computer Science 2023-06-29 Bowen Shi , Xiaopeng Zhang , Yaoming Wang , Jin Li , Wenrui Dai , Junni Zou , Hongkai Xiong , Qi Tian

We address the problem of communicating domain knowledge from a user to the designer of a clustering algorithm. We propose a protocol in which the user provides a clustering of a relatively small random sample of a data set. The algorithm…

Machine Learning · Statistics 2015-06-22 Hassan Ashtiani , Shai Ben-David

Recent work has shown that representation learning plays a critical role in sample-efficient reinforcement learning (RL) from pixels. Unfortunately, in real-world scenarios, representation learning is usually fragile to task-irrelevant…

Machine Learning · Computer Science 2023-02-27 Qiyuan Liu , Qi Zhou , Rui Yang , Jie Wang

We present federated momentum contrastive clustering (FedMCC), a learning framework that can not only extract discriminative representations over distributed local data but also perform data clustering. In FedMCC, a transformed data pair…

Machine Learning · Computer Science 2022-06-13 Runxuan Miao , Erdem Koyuncu

We address the problem of acoustic source separation in a deep learning framework we call "deep clustering." Rather than directly estimating signals or masking functions, we train a deep network to produce spectrogram embeddings that are…

Neural and Evolutionary Computing · Computer Science 2015-08-19 John R. Hershey , Zhuo Chen , Jonathan Le Roux , Shinji Watanabe

Deep clustering algorithms combine representation learning and clustering by jointly optimizing a clustering loss and a non-clustering loss. In such methods, a deep neural network is used for representation learning together with a…

Machine Learning · Computer Science 2020-06-09 Abien Fred Agarap , Arnulfo P. Azcarraga

In order to efficiently explore the chemical space of all possible small molecules, a common approach is to compress the dimension of the system to facilitate downstream machine learning tasks. Towards this end, we present a data driven…

Biomolecules · Quantitative Biology 2024-01-23 Paula Mercurio , Di Liu

Efficient and accurate joint representation of a collection of images, that belong to the same class, is a major research challenge for practical image set classification. Existing methods either make prior assumptions about the data…

Computer Vision and Pattern Recognition · Computer Science 2015-04-02 Muhammad Uzair , Faisal Shafait , Bernard Ghanem , Ajmal Mian

The modeling and simulation of high-dimensional multiscale systems is a critical challenge across all areas of science and engineering. It is broadly believed that even with today's computer advances resolving all spatiotemporal scales…

Machine Learning · Statistics 2023-09-13 Emmanuel Menier , Sebastian Kaltenbach , Mouadh Yagoubi , Marc Schoenauer , Petros Koumoutsakos