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Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…

Computation and Language · Computer Science 2018-11-28 Henghui Zhu , Ioannis Ch. Paschalidis , Amir Tahmasebi

Claims are a fundamental unit of scientific discourse. The exponential growth in the number of scientific publications makes automatic claim extraction an important problem for researchers who are overwhelmed by this information overload.…

Computation and Language · Computer Science 2020-01-20 Titipat Achakulvisut , Chandra Bhagavatula , Daniel Acuna , Konrad Kording

Despite diverse efforts to mine various modalities of medical data, the conversations between physicians and patients at the time of care remain an untapped source of insights. In this paper, we leverage this data to extract structured…

Machine Learning · Computer Science 2020-07-15 Kundan Krishna , Amy Pavel , Benjamin Schloss , Jeffrey P. Bigham , Zachary C. Lipton

Various deep learning algorithms have been developed to analyze different types of clinical data including clinical text classification and extracting information from 'free text' and so on. However, automate the keyword extraction from the…

Computation and Language · Computer Science 2019-10-25 Matthew Tang , Priyanka Gandhi , Md Ahsanul Kabir , Christopher Zou , Jordyn Blakey , Xiao Luo

Diagnosing autism spectrum disorder (ASD) by identifying abnormal speech patterns from examiner-patient dialogues presents significant challenges due to the subtle and diverse manifestations of speech-related symptoms in affected…

Sound · Computer Science 2024-05-09 Chuanbo Hu , Jacob Thrasher , Wenqi Li , Mindi Ruan , Xiangxu Yu , Lynn K Paul , Shuo Wang , Xin Li

Extracting relevant information from medical conversations and providing it to doctors and patients might help in addressing doctor burnout and patient forgetfulness. In this paper, we focus on extracting the Medication Regimen (dosage and…

Computation and Language · Computer Science 2020-10-13 Sai P. Selvaraj , Sandeep Konam

In this paper, we describe novel components for extracting clinically relevant information from medical conversations which will be available as Google APIs. We describe a transformer-based Recurrent Neural Network Transducer (RNN-T) model…

Machine Learning · Computer Science 2021-04-07 Hagen Soltau , Mingqiu Wang , Izhak Shafran , Laurent El Shafey

Clinical information extraction, which involves structuring clinical concepts from unstructured medical text, remains a challenging problem that could benefit from the inclusion of tabular background information available in electronic…

Artificial Intelligence · Computer Science 2025-12-10 Paloma Rabaey , Stefan Heytens , Thomas Demeester

The automatic identification of medication states of Parkinson's disease (PD) patients can assist clinicians in monitoring and scheduling personalized treatments, as well as studying the effects of medication in alleviating the motor…

In radiology, radiologists not only detect lesions from the medical image, but also describe them with various attributes such as their type, location, size, shape, and intensity. While these lesion attributes are rich and useful in many…

Computation and Language · Computer Science 2019-05-01 Yifan Peng , Ke Yan , Veit Sandfort , Ronald M. Summers , Zhiyong Lu

Bipolar disorder, a severe chronic mental illness characterized by pathological mood swings from depression to mania, requires ongoing symptom severity tracking to both guide and measure treatments that are critical for maintaining…

Audio and Speech Processing · Electrical Eng. & Systems 2022-03-28 Zakaria Aldeneh , Mimansa Jaiswal , Michael Picheny , Melvin McInnis , Emily Mower Provost

Psychiatric illnesses are often associated with multiple symptoms, whose severity must be graded for accurate diagnosis and treatment. This grading is usually done by trained clinicians based on human observations and judgments made within…

Sound · Computer Science 2017-03-17 Rita Singh , Justin Baker , Luciana Pennant , Louis-Philippe Morency

Medical decisions directly impact individuals' health and well-being. Extracting decision spans from clinical notes plays a crucial role in understanding medical decision-making processes. In this paper, we develop a new dataset called…

Computation and Language · Computer Science 2024-08-26 Mohamed Elgaar , Jiali Cheng , Nidhi Vakil , Hadi Amiri , Leo Anthony Celi

Patients who effectively manage their symptoms often demonstrate higher levels of engagement in conversations and interventions with healthcare practitioners. This engagement is multifaceted, encompassing cognitive and socio-affective…

Computation and Language · Computer Science 2023-06-21 Yan Wang , Heidi Ann Scharf Donovan , Sabit Hassan , Mailhe Alikhani

An extensive library of symptom inventories has been developed over time to measure clinical symptoms, but this variety has led to several long standing issues. Most notably, results drawn from different settings and studies are not…

Computation and Language · Computer Science 2023-09-12 Eamonn Kennedy , Shashank Vadlamani , Hannah M Lindsey , Kelly S Peterson , Kristen Dams OConnor , Kenton Murray , Ronak Agarwal , Houshang H Amiri , Raeda K Andersen , Talin Babikian , David A Baron , Erin D Bigler , Karen Caeyenberghs , Lisa Delano-Wood , Seth G Disner , Ekaterina Dobryakova , Blessen C Eapen , Rachel M Edelstein , Carrie Esopenko , Helen M Genova , Elbert Geuze , Naomi J Goodrich-Hunsaker , Jordan Grafman , Asta K Haberg , Cooper B Hodges , Kristen R Hoskinson , Elizabeth S Hovenden , Andrei Irimia , Neda Jahanshad , Ruchira M Jha , Finian Keleher , Kimbra Kenney , Inga K Koerte , Spencer W Liebel , Abigail Livny , Marianne Lovstad , Sarah L Martindale , Jeffrey E Max , Andrew R Mayer , Timothy B Meier , Deleene S Menefee , Abdalla Z Mohamed , Stefania Mondello , Martin M Monti , Rajendra A Morey , Virginia Newcombe , Mary R Newsome , Alexander Olsen , Nicholas J Pastorek , Mary Jo Pugh , Adeel Razi , Jacob E Resch , Jared A Rowland , Kelly Russell , Nicholas P Ryan , Randall S Scheibel , Adam T Schmidt , Gershon Spitz , Jaclyn A Stephens , Assaf Tal , Leah D Talbert , Maria Carmela Tartaglia , Brian A Taylor , Sophia I Thomopoulos , Maya Troyanskaya , Eve M Valera , Harm Jan van der Horn , John D Van Horn , Ragini Verma , Benjamin SC Wade , Willian SC Walker , Ashley L Ware , J Kent Werner , Keith Owen Yeates , Ross D Zafonte , Michael M Zeineh , Brandon Zielinski , Paul M Thompson , Frank G Hillary , David F Tate , Elisabeth A Wilde , Emily L Dennis

We have three contributions in this work: 1. We explore the utility of a stacked denoising autoencoder and a paragraph vector model to learn task-independent dense patient representations directly from clinical notes. To analyze if these…

Computation and Language · Computer Science 2018-07-05 Madhumita Sushil , Simon Šuster , Kim Luyckx , Walter Daelemans

Topic modelling is a pivotal unsupervised machine learning technique for extracting valuable insights from large document collections. Existing neural topic modelling methods often encode contextual information of documents, while ignoring…

Computation and Language · Computer Science 2025-02-07 Yanan Ma , Chenghao Xiao , Chenhan Yuan , Sabine N van der Veer , Lamiece Hassan , Chenghua Lin , Goran Nenadic

Identifying the salience (i.e. importance) of discourse units is an important task in language understanding. While events play important roles in text documents, little research exists on analyzing their saliency status. This paper…

Computation and Language · Computer Science 2018-09-10 Zhengzhong Liu , Chenyan Xiong , Teruko Mitamura , Eduard Hovy

Fine-tuning pretrained models for automatically summarizing doctor-patient conversation transcripts presents many challenges: limited training data, significant domain shift, long and noisy transcripts, and high target summary variability.…

Automated Medication Regimen (MR) extraction from medical conversations can not only improve recall and help patients follow through with their care plan, but also reduce the documentation burden for doctors. In this paper, we focus on…

Computation and Language · Computer Science 2020-10-13 Dhruvesh Patel , Sandeep Konam , Sai P. Selvaraj