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Spatial relationships in multi-species data can indicate and affect system outcomes and behaviors, ranging from disease progression in cancer to coral reef resilience in ecology; therefore, quantifying these relationships is an important…
Textual data augmentation (DA) is a prolific field of study where novel techniques to create artificial data are regularly proposed, and that has demonstrated great efficiency on small data settings, at least for text classification tasks.…
Data analysis that uses the output of topological data analysis as input for machine learning algorithms has been the subject of extensive research. This approach offers a means of capturing the global structure of data. Persistent homology…
(Natural Language Processing) NLP techniques such as text classification and topic discovery are very useful in many application areas including information retrieval, knowledge discovery, policy formulation, and decision-making. However,…
Thematic analysis (TA) is a widely used qualitative research method for identifying and interpreting patterns within textual data, such as qualitative interviews. Recent research has shown that it is possible to satisfactorily perform TA…
Persistent homology (PH) is a rigorous mathematical theory that provides a robust descriptor of data in the form of persistence diagrams (PDs) which are 2D multisets of points. Their variable size makes them, however, difficult to combine…
Topological Neural Networks (TNNs) incorporate higher-order relational information beyond pairwise interactions, enabling richer representations than Graph Neural Networks (GNNs). Concurrently, topological descriptors based on persistent…
This paper contains an expository account of persistent homology and its usefulness for topological data analysis. An alternative foundation for level-set persistence is presented using sheaves and cosheaves.
The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…
A method of {\it topological grammars} is proposed for multidimensional data approximation. For data with complex topology we define a {\it principal cubic complex} of low dimension and given complexity that gives the best approximation for…
Computational topology provides a tool, persistent homology, to extract quantitative descriptors from structured objects (images, graphs, point clouds, etc). These descriptors can then be involved in optimization problems, typically as a…
Topological data analysis (TDA) approaches are becoming increasingly popular for studying the dependence patterns in multivariate time series data. In particular, various dependence patterns in brain networks may be linked to specific tasks…
We propose a novel algorithm for supervised dimensionality reduction named Manifold Partition Discriminant Analysis (MPDA). It aims to find a linear embedding space where the within-class similarity is achieved along the direction that is…
We investigate the pertinence of methods from algebraic topology for text data analysis. These methods enable the development of mathematically-principled isometric-invariant mappings from a set of vectors to a document embedding, which is…
Almost all statistical and machine learning methods in analyzing brain networks rely on distances and loss functions, which are mostly Euclidean or matrix norms. The Euclidean or matrix distances may fail to capture underlying subtle…
Understanding the behavior and evolution of a dynamical many-body system by analyzing patterns in their experimentally captured images is a promising method relevant for a variety of living and non-living self-assembled systems. The arrays…
Nowadays, data analysis has become a problem as the amount of data is constantly increasing. In order to overcome this problem in textual data, many models and methods are used in natural language processing. The topic modeling field is one…
Semiconductor manufacturing generates vast amounts of image data, crucial for defect identification and yield optimization, yet often exceeds manual inspection capabilities. Traditional clustering techniques struggle with high-dimensional,…
We present a new tool for data analysis: persistence discrete homology, which is well-suited to analyze filtrations of graphs. In particular, we provide a novel way of representing high-dimensional data as a filtration of graphs using…
Disobeying the classical wisdom of statistical learning theory, modern deep neural networks generalize well even though they typically contain millions of parameters. Recently, it has been shown that the trajectories of iterative…