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We implement the Ising model on a structural connectivity matrix describing the brain at a coarse scale. Tuning the model temperature to its critical value, i.e. at the susceptibility peak, we find a maximal amount of total information…

Neurons and Cognition · Quantitative Biology 2013-09-03 Daniele Marinazzo , Mario Pellicoro , Guorong Wu , Leonardo Angelini , Jesus M Cortes , Sebastiano Stramaglia

Information flow or information transfer is an important concept in dynamical systems which has applications in a wide variety of scientific disciplines. In this study, we show that a rigorous formalism can be established in the context of…

Chaotic Dynamics · Physics 2007-10-05 X. San Liang

For sensory networks, we determine the rate with which they acquire information about the changing external conditions. Comparing this rate with the thermodynamic entropy production that quantifies the cost of maintaining the network, we…

Statistical Mechanics · Physics 2013-04-08 A. C. Barato , D Hartich , U. Seifert

Cells must continuously sense and respond to time-varying environmental stimuli. These signals are transmitted and processed by biochemical signalling networks. However, the biochemical reactions making up these networks are intrinsically…

Molecular Networks · Quantitative Biology 2015-05-18 Filipe Tostevin , Pieter Rein ten Wolde

The capacity to integrate information is a prominent feature of biological and cognitive systems. Integrated Information Theory (IIT) provides a mathematical approach to quantify the level of integration in a system, yet its computational…

Neurons and Cognition · Quantitative Biology 2020-08-31 Miguel Aguilera , Ezequiel Di Paolo

We present a neuronal network model inspired by the Ising model, where each neuron is a binary spin ($s_i = \pm1$) interacting with its neighbors on a 2D lattice. Updates are asynchronous and follow Metropolis dynamics, with a…

Neurons and Cognition · Quantitative Biology 2025-06-10 Sajedeh Sarmastani , Maliheh Ghodrat , Yousef Jamali

The concept of autonomy is fundamental for understanding biological organization and the evolutionary transitions of living systems. Understanding how a system constitutes itself as an individual, cohesive, self-organized entity is a…

Neurons and Cognition · Quantitative Biology 2019-02-07 Miguel Aguilera , Ezequiel Di Paolo

A basic task of information processing is information transfer (flow). Here we study a pair of Brownian particles each coupled to a thermal bath at temperature $T_1$ and $T_2$, respectively. The information flow in such a system is defined…

Statistical Mechanics · Physics 2015-05-13 Armen E. Allahverdyan , Dominik Janzing , Guenter Mahler

Many biological regulatory systems process signals out of steady state and respond with a physiological delay. A simple model of regulation which respects these features shows how the ability of a delayed output to transmit information is…

Molecular Networks · Quantitative Biology 2013-08-13 Francesca Mancini , Chris H. Wiggins , Matteo Marsili , Aleksandra M. Walczak

While information processing in complex systems can be described in abstract, general terms, there are cases in which the relation between these computations and the physical substrate of the underlying system is itself of interest.…

Neurons and Cognition · Quantitative Biology 2017-08-16 Pedro A. M. Mediano , Murray Shanahan

Fluctuations in biochemical networks, e.g., in a living cell, have a complex origin that precludes a description of such systems in terms of bipartite or multipartite processes, as is usually done in the framework of stochastic and/or…

Statistical Mechanics · Physics 2020-01-29 R. Chétrite , M. L. Rosinberg , T. Sagawa , G. Tarjus

Propagation of information encoded in spin degrees of freedom through networks of coupled spins enables important applications in spintronics and quantum information processing. We study control of information propagation in networks of…

Quantum Physics · Physics 2019-10-15 Frank Langbein , Sophie Schirmer , Edmond Jonckheere

Random Threshold Networks (RTNs) are an idealized model of diluted, non symmetric spin glasses, neural networks or gene regulatory networks. RTNs also serve as an interesting general example of any coordinated causal system. Here we study…

Quantitative Methods · Quantitative Biology 2009-01-14 M. Andrecut , D. Foster , H. Carteret , S. A. Kauffman

The dynamics based on information transfer is proposed as an underlying mechanism for the scale-invariant dynamic critical behavior observed in a variety of systems. We apply the dynamics to the globally-coupled Ising model, which is…

Statistical Mechanics · Physics 2009-11-10 M. Y. Choi , B. J. Kim , B. -G. Yoon , H. Park

In networks of mobile autonomous agents, e.g. for data acquisition, we may wish to maximize data transfer or to reliably transfer a minimum amount of data, subject to quality of service or energy constraints. These requirements can be…

Information Theory · Computer Science 2020-01-14 Omar James Faqir , Eric C. Kerrigan , Deniz Gündüz

The total many-body correlations present in finite temperature classical spin systems are studied using the concept of mutual information. As opposed to zero-temperature quantum phase transitions, the total correlations are not maximal at…

Statistical Mechanics · Physics 2011-11-30 Johannes Wilms , Matthias Troyer , Frank Verstraete

We study the optimality conditions of information transfer in systems with memory in the low signal-to-noise ratio regime of vanishing input amplitude. We find that the optimal mutual information is represented by a maximum-variance of the…

Neurons and Cognition · Quantitative Biology 2010-08-13 Lubomir Kostal , Petr Lansky

Living entities in a group communicate and transfer information to one another for a variety of reasons. It might be for foraging food, migration, or escaping threats and obstacles, etc. They do so by interacting with each other and also…

Biological Physics · Physics 2024-04-03 Md. Samsuzzaman , Mohammad Hasanuzzaman , Ahmed Sayeed , Arnab Saha

Empirical evidence suggesting that living systems might operate in the vicinity of critical points, at the borderline between order and disorder, has proliferated in recent years, with examples ranging from spontaneous brain activity to…

Statistical Mechanics · Physics 2014-07-25 Jorge Hidalgo , Jacopo Grilli , Samir Suweis , Miguel A. Munoz , Jayanth R. Banavar , Amos Maritan

We consider a collection of distributed units that interact with one another through the sending of messages. Each message carries a positive ($+1$) or negative ($-1$) tag and causes the receiving unit to send out messages as a function of…

Neurons and Cognition · Quantitative Biology 2017-01-12 Valmir C. Barbosa
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