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Extracting detailed clinical information from free-text medical narratives remains a practical challenge for researchers and healthcare systems. Terminology for immune-mediated and infectious diseases is especially inconsistent across…

Computation and Language · Computer Science 2026-05-29 Veysel Kocaman , Gursev Pirge , Yigit Gul , Ace Vo , Zhenya Nargizyan , David Talby

Bioinformatics workflows are essential for complex biological data analyses and are often described in scientific articles with source code in public repositories. Extracting detailed workflow information from articles can improve…

Computation and Language · Computer Science 2025-03-11 Clémence Sebe , Sarah Cohen-Boulakia , Olivier Ferret , Aurélie Névéol

Few-shot named entity recognition (NER) systems recognize entities using a few labeled training examples. The general pipeline consists of a span detector to identify entity spans in text and an entity-type classifier to assign types to…

Computation and Language · Computer Science 2024-06-21 Chang Tian , Wenpeng Yin , Dan Li , Marie-Francine Moens

Named Entity Recognition (NER) is a fundamental task in natural language processing. It remains a research hotspot due to its wide applicability across domains. Although recent advances in deep learning have significantly improved NER…

Computation and Language · Computer Science 2025-08-12 Xiaobo Zhang , Congqing He , Ying He , Jian Peng , Dajie Fu , Tien-Ping Tan

Named-entity recognition (NER) detects texts with predefined semantic labels and is an essential building block for natural language processing (NLP). Notably, recent NER research focuses on utilizing massive extra data, including…

Computation and Language · Computer Science 2023-05-09 Yuxiang Zhang , Junjie Wang , Xinyu Zhu , Tetsuya Sakai , Hayato Yamana

The objective of our work is to demonstrate the feasibility of utilizing deep learning models to extract safety signals related to the use of dietary supplements (DS) in clinical text. Two tasks were performed in this study. For the named…

Information Retrieval · Computer Science 2020-11-24 Yadan Fan , Sicheng Zhou , Yifan Li , Rui Zhang

We present a simple few-shot named entity recognition (NER) system based on nearest neighbor learning and structured inference. Our system uses a supervised NER model trained on the source domain, as a feature extractor. Across several test…

Computation and Language · Computer Science 2020-10-07 Yi Yang , Arzoo Katiyar

Recognizing useful named entities plays a vital role in medical information processing, which helps drive the development of medical area research. Deep learning methods have achieved good results in medical named entity recognition (NER).…

Computation and Language · Computer Science 2022-11-10 Junzhe Jiang , Mingyue Cheng , Qi Liu , Zhi Li , Enhong Chen

Named Entity Recognition (NER) and Entity Linking (EL) play an essential role in voice assistant interaction, but are challenging due to the special difficulties associated with spoken user queries. In this paper, we propose a novel…

Named-entity recognition (NER) is a task that typically requires large annotated datasets, which limits its applicability across domains with varying entity definitions. This paper addresses few-shot NER, aiming to transfer knowledge to new…

Computation and Language · Computer Science 2024-12-13 Ayoub Hammal , Benno Uthayasooriyar , Caio Corro

Named entity recognition (NER) models often struggle with noisy inputs, such as those with spelling mistakes or errors generated by Optical Character Recognition processes, and learning a robust NER model is challenging. Existing robust NER…

Computation and Language · Computer Science 2024-07-29 Chaoyi Ai , Yong Jiang , Shen Huang , Pengjun Xie , Kewei Tu

This paper addresses Named Entity Recognition (NER) in the domain of Vocational Education and Training (VET), focusing on historical, digitized documents that suffer from OCR-induced noise. We propose a robust NER approach leveraging…

Computation and Language · Computer Science 2026-01-05 Alexander M. Esser , Jens Dörpinghaus

Named entity recognition (NER) models are typically based on the architecture of Bi-directional LSTM (BiLSTM). The constraints of sequential nature and the modeling of single input prevent the full utilization of global information from…

Computation and Language · Computer Science 2019-11-20 Ying Luo , Fengshun Xiao , Hai Zhao

Named Entity Recognition (NER) is a challenging task that extracts named entities from unstructured text data, including news, articles, social comments, etc. The NER system has been studied for decades. Recently, the development of Deep…

Computation and Language · Computer Science 2020-09-03 Jiuniu Wang , Wenjia Xu , Xingyu Fu , Guangluan Xu , Yirong Wu

Named-entity recognition (NER) aims at identifying entities of interest in a text. Artificial neural networks (ANNs) have recently been shown to outperform existing NER systems. However, ANNs remain challenging to use for non-expert users.…

Computation and Language · Computer Science 2017-05-17 Franck Dernoncourt , Ji Young Lee , Peter Szolovits

Named Entity Recognition (NER) serves as a foundational component in many natural language processing (NLP) pipelines. However, current NER models typically output a single predicted label sequence without any accompanying measure of…

Computation and Language · Computer Science 2026-01-27 Matthew Singer , Srijan Sengupta , Karl Pazdernik

Named entity recognition (NER) is a crucial task that aims to identify structured information, which is often replete with complex, technical terms and a high degree of variability. Accurate and reliable NER can facilitate the extraction…

Computation and Language · Computer Science 2024-10-21 Grace Yang , Zhiyi Li , Yadong Liu , Jungyeul Park

Biomedical Named Entity Recognition (BioNER) is the fundamental task of identifying named entities from biomedical text. However, BioNER suffers from severe data scarcity and lacks high-quality labeled data due to the highly specialized and…

Computation and Language · Computer Science 2023-05-19 Sreyan Ghosh , Utkarsh Tyagi , Sonal Kumar , Dinesh Manocha

Named Entity Recognition (NER) is a challenging and widely studied task that involves detecting and typing entities in text. So far,NER still approaches entity typing as a task of classification into universal classes (e.g. date, person, or…

Computation and Language · Computer Science 2023-02-22 Tristan Luiggi , Laure Soulier , Vincent Guigue , Siwar Jendoubi , Aurélien Baelde

The state of art natural language processing systems relies on sizable training datasets to achieve high performance. Lack of such datasets in the specialized low resource domains lead to suboptimal performance. In this work, we adapt…

Computation and Language · Computer Science 2021-08-27 Usama Yaseen , Stefan Langer