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Related papers: Biomedical Named Entity Recognition via Reference-…

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In the domain of Natural Language Processing (NLP), Named Entity Recognition (NER) stands out as a pivotal mechanism for extracting structured insights from unstructured text. This manuscript offers an exhaustive exploration into the…

Computation and Language · Computer Science 2023-09-26 Kalyani Pakhale

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

Computation and Language · Computer Science 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Deep neural network models have recently achieved state-of-the-art performance gains in a variety of natural language processing (NLP) tasks (Young, Hazarika, Poria, & Cambria, 2017). However, these gains rely on the availability of large…

Computation and Language · Computer Science 2018-11-15 Maximilian Hofer , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

Named Entity Recognition (NER) is a critical component of Natural Language Processing with diverse applications in information extraction and conversational AI. However, NER in specific domains for low-resource languages faces challenges…

Computational Engineering, Finance, and Science · Computer Science 2026-05-07 Do Minh Duc , Quan Xuan Truong , Viet Tran Hong , Le Hoang Anh , Mac Thi Minh Tra , Nguyen Van Thuy , Le Hai Ha , Vinh Nguyen Van

Biomedical entity linking (BioEL) has achieved remarkable progress with the help of pre-trained language models. However, existing BioEL methods usually struggle to handle rare and difficult entities due to long-tailed distribution. To…

Computation and Language · Computer Science 2023-12-18 Zhenxi Lin , Ziheng Zhang , Xian Wu , Yefeng Zheng

Named Entity Recognition (NER) is an essential precursor task for many natural language applications, such as relation extraction or event extraction. Much of the NER research has been done on datasets with few classes of entity types (e.g.…

Computation and Language · Computer Science 2020-09-17 Parul Awasthy , Taesun Moon , Jian Ni , Radu Florian

Biomedical entity linking (EL) consists of named entity recognition (NER) and named entity disambiguation (NED). EL models are trained on corpora labeled by a predefined KB. However, it is a common scenario that only entities within a…

Computation and Language · Computer Science 2023-06-06 Hongyi Yuan , Keming Lu , Zheng Yuan

Biomedical Named Entity Recognition presents significant challenges due to the complexity of biomedical terminology and inconsistencies in annotation across datasets. This paper introduces SRU-NER (Slot-based Recurrent Unit NER), a novel…

Computation and Language · Computer Science 2025-07-25 João Ruano , Gonçalo M. Correia , Leonor Barreiros , Afonso Mendes

Named Entity Recognition (NER) aims to extract and classify entity mentions in the text into pre-defined types (e.g., organization or person name). Recently, many works have been proposed to shape the NER as a machine reading comprehension…

Computation and Language · Computer Science 2023-09-21 Yibo Wang , Wenting Zhao , Yao Wan , Zhongfen Deng , Philip S. Yu

As a fundamental natural language processing task and one of core knowledge extraction techniques, named entity recognition (NER) is widely used to extract information from texts for downstream tasks. Nested NER is a branch of NER in which…

Computation and Language · Computer Science 2022-04-19 Yifei Yang , Zuchao Li , Hai Zhao

We conducted a human subject study of named entity recognition on a noisy corpus of conversational music recommendation queries, with many irregular and novel named entities. We evaluated the human NER linguistic behaviour in these…

Computation and Language · Computer Science 2023-03-14 Elena V. Epure , Romain Hennequin

This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data. In particular, we look into the application of (i) rule-based, (ii) deep learning and (iii) transfer learning…

In medical information extraction, medical Named Entity Recognition (NER) is indispensable, playing a crucial role in developing medical knowledge graphs, enhancing medical question-answering systems, and analyzing electronic medical…

Computation and Language · Computer Science 2024-03-26 Xiaojing Du , Hanjie Zhao , Danyan Xing , Yuxiang Jia , Hongying Zan

In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER…

Computation and Language · Computer Science 2020-09-22 Usman Naseem , Matloob Khushi , Vinay Reddy , Sakthivel Rajendran , Imran Razzak , Jinman Kim

Named entity recognition (NER) is the very first step in the linguistic processing of any new domain. It is currently a common process in BioNLP on English clinical text. However, it is still in its infancy in other major languages, as it…

Computation and Language · Computer Science 2019-12-20 Fernando Sánchez León , Ana González Ledesma

Recently, neural networks have shown promising results for named entity recognition (NER), which needs a number of labeled data to for model training. When meeting a new domain (target domain) for NER, there is no or a few labeled data,…

Computation and Language · Computer Science 2018-10-17 Lin Li , Yueqing Sun

Named Entity Recognition (NER) is an important subtask of information extraction that seeks to locate and recognise named entities. Despite recent achievements, we still face limitations in correctly detecting and classifying entities,…

Information Retrieval · Computer Science 2018-09-07 Diego Esteves

Named Entity Recognition (NER) frequently suffers from the problem of insufficient labeled data, particularly in fine-grained NER scenarios. Although $K$-shot learning techniques can be applied, their performance tends to saturate when the…

Computation and Language · Computer Science 2023-11-14 Su Ah Lee , Seokjin Oh , Woohwan Jung

Motivation: Biomedical named-entity normalization involves connecting biomedical entities with distinct database identifiers in order to facilitate data integration across various fields of biology. Existing systems for biomedical named…

Computation and Language · Computer Science 2023-10-24 Zainab Awan , Tim Kahlke , Peter Ralph , Paul Kennedy

Although deep learning techniques have shown significant achievements, they frequently depend on extensive amounts of hand-labeled data and tend to perform inadequately in few-shot scenarios. The objective of this study is to devise a…

Computation and Language · Computer Science 2024-10-28 Leilei Su , Jian Chen , Yifan Peng , Cong Sun