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Automated and semi-automated techniques in biomedical electron microscopy (EM) enable the acquisition of large datasets at a high rate. Segmentation methods are therefore essential to analyze and interpret these large volumes of data, which…

Computer Vision and Pattern Recognition · Computer Science 2023-08-08 Anusha Aswath , Ahmad Alsahaf , Ben N. G. Giepmans , George Azzopardi

Most recent semantic segmentation methods train deep convolutional neural networks with fully annotated masks requiring pixel-accuracy for good quality training. Common weakly-supervised approaches generate full masks from partial input…

Computer Vision and Pattern Recognition · Computer Science 2018-04-05 Meng Tang , Abdelaziz Djelouah , Federico Perazzi , Yuri Boykov , Christopher Schroers

Deep learning based image reconstruction methods outperform traditional methods. However, neural networks suffer from a performance drop when applied to images from a different distribution than the training images. For example, a model…

Image and Video Processing · Electrical Eng. & Systems 2022-06-22 Mohammad Zalbagi Darestani , Jiayu Liu , Reinhard Heckel

We present a novel approach for extracting 3D atomic-level information from transmission electron microscopy (TEM) images affected by significant noise. The approach is based on formulating depth estimation as a semantic segmentation…

Computer Vision and Pattern Recognition · Computer Science 2026-01-29 Matan Leibovich , Mai Tan , Ramon Manzorro , Adria Marcos-Morales , Sreyas Mohan , Peter A. Crozier , Carlos Fernandez-Granda

The highly energetic electrons in a transmission electron microscope (TEM) can alter or even completely destroy the structure of samples before sufficient information can be obtained. This is especially problematic in the case of zeolites,…

Materials Science · Physics 2021-05-05 Abner Velazco , Daen Jannis , Armand Béché , Johan Verbeeck

Nowadays, modern electron microscopes deliver images at atomic scale. The precise atomic structure encodes information about material properties. Thus, an important ingredient in the image analysis is to locate the centers of the atoms…

Computer Vision and Pattern Recognition · Computer Science 2017-09-13 Benjamin Berkels , Benedikt Wirth

Sparse sensor array selection arises in many engineering applications, where it is imperative to obtain maximum spatial resolution from a limited number of array elements. Recent research shows that computational complexity of array…

Signal Processing · Electrical Eng. & Systems 2020-06-03 Ahmet M. Elbir , Kumar Vijay Mishra

Machine learning at the edge offers great benefits such as increased privacy and security, low latency, and more autonomy. However, a major challenge is that many devices, in particular edge devices, have very limited memory, weak…

Machine Learning · Computer Science 2019-09-05 Yang Li , Thomas Strohmer

Momentum-resolved scanning transmission electron microscopy (MRSTEM) is a powerful phase-contrast technique that can map lateral magnetic and electric fields ranging from the micrometer to the subatomic scale. Resolving fields ranging from…

Deep learning approaches have shown promising performance for compressed sensing-based Magnetic Resonance Imaging. While deep neural networks trained with mean squared error (MSE) loss functions can achieve high peak signal to noise ratio,…

Computer Vision and Pattern Recognition · Computer Science 2018-07-02 Maximilian Seitzer , Guang Yang , Jo Schlemper , Ozan Oktay , Tobias Würfl , Vincent Christlein , Tom Wong , Raad Mohiaddin , David Firmin , Jennifer Keegan , Daniel Rueckert , Andreas Maier

Image compression is a critical tool in decreasing the cost of storage and improving the speed of transmission over the internet. While deep learning applications for natural images widely adopts the usage of lossy compression techniques,…

Image and Video Processing · Electrical Eng. & Systems 2024-09-26 Anvar Kurmukov , Bogdan Zavolovich , Aleksandra Dalechina , Vladislav Proskurov , Boris Shirokikh

Here we show that compressive sensing allow 4-dimensional (4-D) STEM data to be obtained and accurately reconstructed with both high-speed and low fluence. The methodology needed to achieve these results compared to conventional 4-D…

The appearance of direct electron detectors marked a new era for electron diffraction. Their high sensitivity and low noise opens the possibility to extend electron diffraction from transmission electron microscopes (TEM) to lower energies…

Applied Physics · Physics 2025-02-18 Nikita Denisov , Andrey Orekhov , Johan Verbeeck

Vision models pretrained on large-scale RGB natural image datasets are widely reused for electron microscopy image segmentation. In electron microscopy, volumetric data are acquired as serial sections and processed as stacks of adjacent…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Zsófia Molnár , Gergely Szabó , András Horváth

Electromagnetic (EM) sensing is a wide-spread contactless examination technique in science, engineering and military. However, conventional sensing systems are mostly lack of intelligence, which not only require expensive hardware and…

Signal Processing · Electrical Eng. & Systems 2019-12-06 Hao-Yang Li , Han-Ting Zhao , Meng-Lin Wei , Heng-Xin Ruan , Ya Shuang , Tie Jun Cui , Lianlin Li

We introduce a local machine-learning method for predicting the electron densities of periodic systems. The framework is based on a numerical, atom-centred auxiliary basis, which enables an accurate expansion of the all-electron density in…

Chemical Physics · Physics 2021-11-10 Alan M. Lewis , Andrea Grisafi , Michele Ceriotti , Mariana Rossi

Federated learning is a privacy-preserving approach to train a global model at a central server by collaborating with wireless devices, each with its own local training data set. In this paper, we present a compressive sensing approach for…

Signal Processing · Electrical Eng. & Systems 2020-08-06 Yo-Seb Jeon , Mohammad Mohammadi Amiri , Jun Li , H. Vincent Poor

Explicit channel state information at the transmitter side is helpful to improve downlink precoding performance for multi-user MIMO systems. In order to reduce feedback signalling overhead, compression of Channel State Information (CSI) is…

Signal Processing · Electrical Eng. & Systems 2021-10-13 Benedikt Groß , Rana Ahmed Salem , Thorsten Wild , Gerhard Wunder

Morphology of mitochondria plays critical roles in mediating their physiological functions. Accurate segmentation of mitochondria from 3D electron microscopy (EM) images is essential to quantitative characterization of their morphology at…

Computer Vision and Pattern Recognition · Computer Science 2022-06-16 Yunpeng Xiao , Youpeng Zhao , Ge Yang

The deployment of deep convolutional neural networks (CNNs) in many real world applications is largely hindered by their high computational cost. In this paper, we propose a novel learning scheme for CNNs to simultaneously 1) reduce the…

Computer Vision and Pattern Recognition · Computer Science 2017-08-23 Zhuang Liu , Jianguo Li , Zhiqiang Shen , Gao Huang , Shoumeng Yan , Changshui Zhang