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R packages are the fundamental units of reproducible code in R, providing a mechanism for distributing user-developed code, documentation, and data. Docker is a virtualization technology that allows applications and their dependencies to be…

Quantitative Methods · Quantitative Biology 2023-03-23 V. P. Nagraj , Stephen D. Turner

Data collaboration activities typically require systematic or protocol-based coordination to be scalable. Git, an effective enabler for collaborative coding, has been attested for its success in countless projects around the world. Hence,…

Developers use and contribute to repositories on GitHub. Documentation present in the repositories serves as an important source by helping developers to understand, maintain and contribute to the project. Currently, documentation in a…

Software Engineering · Computer Science 2021-03-02 Akhila Sri Manasa Venigalla , Sridhar Chimalakonda

An increase in diverse technology stacks and third-party library usage has led developers to inevitably switch technologies. To assist these developers, maintainers have started to release their libraries to multiple technologies, i.e., a…

The embeddings of entities in a large knowledge base (e.g., Wikipedia) are highly beneficial for solving various natural language tasks that involve real world knowledge. In this paper, we present Wikipedia2Vec, a Python-based open-source…

Computation and Language · Computer Science 2020-09-29 Ikuya Yamada , Akari Asai , Jin Sakuma , Hiroyuki Shindo , Hideaki Takeda , Yoshiyasu Takefuji , Yuji Matsumoto

While multi-view 3D reconstruction has shifted toward large-scale foundation models capable of inferring globally consistent geometry, their reliance on massive computational clusters for training has created a significant barrier to entry…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Brandon Leblanc , Charalambos Poullis

In this paper we introduce DISROPT, a Python package for distributed optimization over networks. We focus on cooperative set-ups in which an optimization problem must be solved by peer-to-peer processors (without central coordinators) that…

Optimization and Control · Mathematics 2021-04-21 Francesco Farina , Andrea Camisa , Andrea Testa , Ivano Notarnicola , Giuseppe Notarstefano

Large Language Models (LLMs) play an ever-increasing role in the field of Artificial Intelligence (AI)--not only for natural language processing but also for code understanding and generation. To stimulate open and responsible research on…

Jupyter notebooks has emerged as a standard tool for data science programming. Programs in Jupyter notebooks are different from typical programs as they are constructed by a collection of code snippets interleaved with text and…

Software Engineering · Computer Science 2021-03-02 Malin Källén , Tobias Wrigstad

Docker has gained attention as a lightweight container-based virtualization platform. The process for building a Docker image is defined in a text file called a Dockerfile. A Dockerfile can be considered as a kind of source code that…

Software Engineering · Computer Science 2025-04-28 Yuki Goto , Shinsuke Matsumoto , Shinji Kusumoto

With the rapid development of AI technologies, thousands of AI papers are being published each year. Many of these papers have released sample code to facilitate follow-up researchers. This paper presents an explorative study of over 1700…

Digital Libraries · Computer Science 2019-03-06 Boyang Zhang

In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not…

Software Engineering · Computer Science 2023-08-03 Lázaro Costa , Susana Barbosa , Jácome Cunha

Tokenization is a crucial step in information retrieval, especially for lexical matching algorithms, where the quality of indexable tokens directly impacts the effectiveness of a retrieval system. Since different languages have unique…

Computation and Language · Computer Science 2022-10-12 Odunayo Ogundepo , Xinyu Zhang , Jimmy Lin

Python's dynamic typing system offers flexibility and expressiveness but can lead to type-related errors, prompting the need for automated type inference to enhance type hinting. While existing learning-based approaches show promising…

Software Engineering · Computer Science 2024-08-14 Chong Wang , Jian Zhang , Yiling Lou , Mingwei Liu , Weisong Sun , Yang Liu , Xin Peng

Recent research has achieved impressive results on understanding and improving source code by building up on machine-learning techniques developed for natural languages. A significant advancement in natural-language understanding has come…

Software Engineering · Computer Science 2020-08-19 Aditya Kanade , Petros Maniatis , Gogul Balakrishnan , Kensen Shi

We introduce an algorithm that simplifies the construction of efficient estimators, making them accessible to a broader audience. 'Dimple' takes as input computer code representing a parameter of interest and outputs an efficient estimator.…

Methodology · Statistics 2025-06-17 Alex Luedtke

Docker is a containerization service that allows for convenient deployment of websites, databases, applications' APIs, and machine learning (ML) models with a few lines of code. Studies have recently explored the use of Docker for deploying…

Software Engineering · Computer Science 2022-06-03 Moses Openja , Forough Majidi , Foutse Khomh , Bhagya Chembakottu , Heng Li

As one of the most popular dynamic languages, Python experiences a decrease in readability and maintainability when code smells are present. Recent advancements in Large Language Models have sparked growing interest in AI-enabled tools for…

Software Engineering · Computer Science 2024-08-22 Beiqi Zhang , Peng Liang , Qiong Feng , Yujia Fu , Zengyang Li

Data-rich documents are ubiquitous in various applications, yet they often rely solely on textual descriptions to convey data insights. Prior research primarily focused on providing visualization-centric augmentation to data-rich documents.…

Human-Computer Interaction · Computer Science 2025-02-07 Ruishi Zou , Yinqi Tang , Jingzhu Chen , Siyu Lu , Yan Lu , Yingfan Yang , Chen Ye

We introduce program splicing, a programming methodology that aims to automate the commonly used workflow of copying, pasting, and modifying code available online. Here, the programmer starts by writing a "draft" that mixes unfinished code,…

Programming Languages · Computer Science 2017-05-26 Yanxin Lu , Swarat Chaudhuri , Chris Jermaine , David Melski