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Single-cell omics enable the profiles of cells, which contain large numbers of biological features, to be quantified. Cluster analysis, a dimensionality reduction process, is used to reduce the dimensions of the data to make it…

Genomics · Quantitative Biology 2024-06-06 Okezue Bell , Arthur Lee , Elizabeth Engle

Scalable algorithms of posterior approximation allow Bayesian nonparametrics such as Dirichlet process mixture to scale up to larger dataset at fractional cost. Recent algorithms, notably the stochastic variational inference performs local…

Machine Learning · Computer Science 2025-02-25 Kart-Leong Lim , Xudong Jiang

Stochastic gradient descent method and its variants constitute the core optimization algorithms that achieve good convergence rates for solving machine learning problems. These rates are obtained especially when these algorithms are…

Machine Learning · Computer Science 2024-03-14 S. Ilker Birbil , Ozgur Martin , Gonenc Onay , Figen Oztoprak

We study the problem of supervised learning a metric space under discriminative constraints. Given a universe $X$ and sets ${\cal S}, {\cal D}\subset {X \choose 2}$ of similar and dissimilar pairs, we seek to find a mapping $f:X\to Y$, into…

Computational Geometry · Computer Science 2019-03-20 Diego Ihara Centurion , Neshat Mohammadi , Anastasios Sidiropoulos

Cluster analysis is one of the essential tasks in data mining and knowledge discovery. Each type of data poses unique challenges in achieving relatively efficient partitioning of the data into homogeneous groups. While the algorithms for…

Machine Learning · Computer Science 2018-12-11 Ruben A. Gevorgyan , Yenok B. Hakobyan

To facilitate widespread adoption of automated engineering design techniques, existing methods must become more efficient and generalizable. In the field of topology optimization, this requires the coupling of modern optimization methods…

Computational Engineering, Finance, and Science · Computer Science 2024-02-23 Connor N. Mallon , Aaron W. Thornton , Matthew R. Hill , Santiago Badia

We introduce a novel end-to-end approach for learning to cluster in the absence of labeled examples. Our clustering objective is based on optimizing normalized cuts, a criterion which measures both intra-cluster similarity as well as…

Machine Learning · Computer Science 2019-10-18 Azade Nazi , Will Hang , Anna Goldie , Sujith Ravi , Azalia Mirhoseini

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

Subspace learning and matrix factorization problems have great many applications in science and engineering, and efficient algorithms are critical as dataset sizes continue to grow. Many relevant problem formulations are non-convex, and in…

Numerical Analysis · Computer Science 2022-02-22 Dejiao Zhang , Laura Balzano

Graph clustering is a basic technique in machine learning, and has widespread applications in different domains. While spectral techniques have been successfully applied for clustering undirected graphs, the performance of spectral…

Machine Learning · Computer Science 2019-08-07 Mihai Cucuringu , Huan Li , He Sun , Luca Zanetti

Recently, graph mining approaches have become very popular, especially in domains such as bioinformatics, chemoinformatics and social networks. In this scope, one of the most challenging tasks is frequent subgraph discovery. This task has…

Databases · Computer Science 2016-08-24 Sabeur Aridhi , Laurent d'Orazio , Mondher Maddouri , Engelbert Mephu Nguifo

Joint alignment of a collection of functions is the process of independently transforming the functions so that they appear more similar to each other. Typically, such unsupervised alignment algorithms fail when presented with complex data…

Machine Learning · Computer Science 2012-10-19 Marwan A. Mattar , Allen R. Hanson , Erik G. Learned-Miller

Many real-world clustering problems are plagued by incomplete data characterized by missing or absent features for some or all of the data instances. Traditional clustering methods cannot be directly applied to such data without…

Machine Learning · Computer Science 2018-07-10 Shounak Datta , Supritam Bhattacharjee , Swagatam Das

The problem of fitting distances by tree-metrics has received significant attention in the theoretical computer science and machine learning communities alike, due to many applications in natural language processing, phylogeny, cancer…

Machine Learning · Computer Science 2022-05-20 Eli Chien , Puoya Tabaghi , Olgica Milenkovic

In this paper, a similarity-driven cluster merging method is proposed for unsuper-vised fuzzy clustering. The cluster merging method is used to resolve the problem of cluster validation. Starting with an overspecified number of clusters in…

Machine Learning · Computer Science 2012-07-19 Xuejian Xiong , Kap Chan , Kian Lee Tan

In this paper, we study the classic submodular maximization problem subject to a group equality constraint under both non-adaptive and adaptive settings. It has been shown that the utility function of many machine learning applications,…

Machine Learning · Computer Science 2023-08-30 Shaojie Tang , Jing Yuan

In this paper, we study correlation clustering under fairness constraints. Fair variants of $k$-median and $k$-center clustering have been studied recently, and approximation algorithms using a notion called fairlet decomposition have been…

Data Structures and Algorithms · Computer Science 2020-03-04 Sara Ahmadian , Alessandro Epasto , Ravi Kumar , Mohammad Mahdian

Deep clustering as an important branch of unsupervised representation learning focuses on embedding semantically similar samples into the identical feature space. This core demand inspires the exploration of contrastive learning and…

Computer Vision and Pattern Recognition · Computer Science 2024-04-16 Haifeng Xia , Hai Huang , Zhengming Ding

Two important optimization problems in the analysis of geometric data sets are clustering and sketching. Here, clustering refers to the problem of partitioning some input metric measure space (mm-space) into k clusters, minimizing some…

Computational Geometry · Computer Science 2018-10-19 Facundo Mémoli , Anastasios Sidiropoulos , Kritika Singhal

We propose a novel method to fit and segment multi-structural data via convex relaxation. Unlike greedy methods --which maximise the number of inliers-- this approach efficiently searches for a soft assignment of points to models by…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Paul Amayo , Pedro Pinies , Lina M. Paz , Paul Newman