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Comparative analyses of phylogenetic trees typically require identical taxon sets, however, in practice, trees often include distinct but overlapping taxa. Pruning non-shared leaves discards phylogenetic signal, whereas tree completion can…

Populations and Evolution · Quantitative Biology 2026-04-28 Aleksandr Koshkarov , Nadia Tahiri

It is proved that each bounded injective bilateral weighted shift $W$ satisfying the equality $W^{*n}W^{n}=(W^{*}W)^{n}$ for some integer $n\geq 2$ is quasinormal. For any integer $n\geq 2$, an example of a bounded non-quasinormal weighted…

Functional Analysis · Mathematics 2025-05-02 Paweł Pietrzycki

Fitting distances to tree metrics and ultrametrics are two widely used methods in hierarchical clustering, primarily explored within the context of numerical taxonomy. Given a positive distance function…

Data Structures and Algorithms · Computer Science 2025-04-25 Amir Carmel , Debarati Das , Evangelos Kipouridis , Evangelos Pipis

Weighted recursive trees are built by adding successively vertices with predetermined weights to a tree: each new vertex is attached to a parent chosen at random with probability proportional to its weight. In the case where the total…

Probability · Mathematics 2022-07-12 Michel Pain , Delphin Sénizergues

The weight of the minimum spanning tree in a complete weighted graph with random edge weights is a well-known problem. For various classes of distributions, it is proved that the weight of the minimum spanning tree tends to a constant,…

Combinatorics · Mathematics 2024-05-31 Nikita Zvonkov

Given an undirected graph $G = (V, E)$ and a weight function $w:E \to \mathbb{R}$, the \textsc{Minimum Dominating Tree} problem asks to find a minimum weight sub-tree of $G$, $T = (U, F)$, such that every $v \in V \setminus U$ is adjacent…

Computational Complexity · Computer Science 2018-02-14 Gilad Kutiel

We discuss a notion of convergence for binary trees that is based on subtree sizes. In analogy to recent developments in the theory of graphs, posets and permutations we investigate some general aspects of the topology, such as a…

Combinatorics · Mathematics 2024-02-14 Rudolf Grübel

We study the metric Steiner tree problem in the sublinear query model. In this problem, for a set of $n$ points $V$ in a metric space given to us by means of query access to an $n\times n$ matrix $w$, and a set of terminals $T\subseteq V$,…

Data Structures and Algorithms · Computer Science 2024-11-15 Sepideh Mahabadi , Mohammad Roghani , Jakub Tarnawski , Ali Vakilian

In general the problem of finding a miminum spanning tree for a weighted directed graph is difficult but solvable. There are a lot of differences between problems for directed and undirected graphs, therefore the algorithms for undirected…

Discrete Mathematics · Computer Science 2008-01-16 V. A. Buslov , V. A. Khudobakhshov

The largest common embeddable subtree problem asks for the largest possible tree embeddable into two input trees and generalizes the classical maximum common subtree problem. Several variants of the problem in labeled and unlabeled rooted…

Data Structures and Algorithms · Computer Science 2018-05-03 Andre Droschinsky , Nils M. Kriege , Petra Mutzel

Given a directed graph $G=(V,A)$, the Directed Maximum Leaf Spanning Tree problem asks to compute a directed spanning tree (i.e., an out-branching) with as many leaves as possible. By designing a Branch-and-Reduced algorithm combined with…

Data Structures and Algorithms · Computer Science 2009-11-11 Daniel Raible , Henning Fernau

In this paper we investigate an extremal problem on binary phylogenetic trees. Given two such trees $T_1$ and $T_2$, both with leaf-set ${1,2,...,n}$, we are interested in the size of the largest subset $S \subseteq {1,2,...,n}$ of leaves…

Combinatorics · Mathematics 2013-02-21 Daniel M. Martin , Bhalchandra D. Thatte

A general formulation is presented for continuum scaling limits of stochastic spanning trees. A spanning tree is expressed in this limit through a consistent collection of subtrees, which includes a tree for every finite set of endpoints in…

Probability · Mathematics 2012-06-19 Michael Aizenman , Almut Burchard , Charles M. Newman , David B. Wilson

In a paper from 2012 Jab{\l}o\'nski, Jung and Stochel introduced the weighted shifts on directed trees, a generalisation of well known weighted shift operators on $\ell^2$. In the last decade this class has proven itself handy for finding…

Functional Analysis · Mathematics 2024-09-26 Piotr Pikul

We introduce the notion of quota trees in directed graphs. Given a nonnegative integer ``quota'' for each vertex of a directed multigraph $G$, a quota tree is an immersed rooted tree which hits each vertex of $G$ the prescribed number of…

Combinatorics · Mathematics 2024-01-04 Tad White

The tree-cut width of a graph is a graph parameter defined by Wollan [J. Comb. Theory, Ser. B, 110:47-66, 2015] with the help of tree-cut decompositions. In certain cases, tree-cut width appears to be more adequate than treewidth as an…

Data Structures and Algorithms · Computer Science 2018-05-16 Eunjung Kim , Sang-il Oum , Christophe Paul , Ignasi Sau , Dimitrios M. Thilikos

We prove that the local limit of the weighted spanning trees on any simple connected high degree almost regular sequence of electric networks is the Poisson(1) branching process conditioned to survive forever, by generalizing [NP22] and…

Probability · Mathematics 2026-01-01 Ágnes Kúsz

We show that the expected size of the maximum agreement subtree of two $n$-leaf trees, uniformly random among all trees with the shape, is $\Theta(\sqrt{n})$. To derive the lower bound, we prove a global structural result on a decomposition…

Combinatorics · Mathematics 2018-09-13 Pratik Misra , Seth Sullivant

This paper deals with the multiobjective version of the optimal spanning tree problem. More precisely, we are interested in determining the optimal spanning tree according to an Ordered Weighted Average (OWA) of its objective values. We…

Data Structures and Algorithms · Computer Science 2009-11-02 Lucie Galand , Olivier Spanjaard

This paper studies the "explanation problem" for tree- and linearly-ordered array data, a problem motivated by database applications and recently solved for the one-dimensional tree-ordered case. In this paper, one is given a matrix A whose…

Data Structures and Algorithms · Computer Science 2011-01-11 Howard Karloff , Flip Korn , Konstantin Makarychev , Yuval Rabani