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Stochastic Neighbor Embedding (SNE) algorithms like UMAP and tSNE often produce visualizations that do not preserve the geometry of noisy and high dimensional data. In particular, they can spuriously separate connected components of the…

Machine Learning · Computer Science 2025-09-05 Tristan Luca Saidi , Abigail Hickok , Bastian Rieck , Andrew J. Blumberg

We first show that the commonly used dimensionality reduction (DR) methods such as t-SNE and LargeVis poorly capture the global structure of the data in the low dimensional embedding. We show this via a number of tests for the DR methods…

Machine Learning · Computer Science 2018-03-05 Ehsan Amid , Manfred K. Warmuth

We propose a new word embedding model, called SPhrase, that incorporates supervised phrase information. Our method modifies traditional word embeddings by ensuring that all target words in a phrase have exactly the same context. We…

Computation and Language · Computer Science 2020-02-19 Manni Singh , David Weston , Mark Levene

Large-scale multimodal contrastive learning has recently achieved impressive success in learning rich and transferable representations, yet it remains fundamentally limited by the uniform treatment of feature dimensions and the neglect of…

Machine Learning · Computer Science 2026-02-11 Jinjin Guo , Yexin Li , Zhichao Huang , Jun Fang , Zhiyuan Liu , Chao Liu , Pengzhang Liu , Qixia Jiang

Unsupervised machine learning has recently gained much attention in the field of molecular dynamics (MD). Particularly, dimensionality reduction techniques have been regularly employed to analyze large volumes of high-dimensional MD data to…

Chemical Physics · Physics 2025-05-23 Patryk Tajs , Mateusz Skarupski , Jakub Rydzewski

Deep neural networks often require copious amount of labeled-data to train their scads of parameters. Training larger and deeper networks is hard without appropriate regularization, particularly while using a small dataset. Laterally,…

Computer Vision and Pattern Recognition · Computer Science 2019-05-31 Xiang Xu , Xiong Zhou , Ragav Venkatesan , Gurumurthy Swaminathan , Orchid Majumder

With the increasing adoption of Deep Neural Network (DNN) models as integral parts of software systems, efficient operational testing of DNNs is much in demand to ensure these models' actual performance in field conditions. A challenge is…

Software Engineering · Computer Science 2019-06-28 Zenan Li , Xiaoxing Ma , Chang Xu , Chun Cao , Jingwei Xu , Jian Lü

Subspace clustering assumes that the data is sepa-rable into separate subspaces. Such a simple as-sumption, does not always hold. We assume that, even if the raw data is not separable into subspac-es, one can learn a representation…

Machine Learning · Computer Science 2019-12-11 Jyoti Maggu , Angshul Majumdar , Emilie Chouzenoux

This paper investigates the problem of network embedding, which aims at learning low-dimensional vector representation of nodes in networks. Most existing network embedding methods rely solely on the network structure, i.e., the linkage…

Social and Information Networks · Computer Science 2016-10-19 Xiaofei Sun , Jiang Guo , Xiao Ding , Ting Liu

Data tensors of orders 2 and greater are now routinely being generated. These data collections are increasingly huge and growing. Many scientific and medical data tensors are tensor fields (e.g., images, videos, geographic data) in which…

Machine Learning · Computer Science 2024-03-12 Taemin Heo , Chandrajit Bajaj

Higher-order tensors have received increased attention across science and engineering. While most tensor decomposition methods are developed for a single tensor observation, scientific studies often collect side information, in the form of…

Methodology · Statistics 2021-10-29 Jiaxin Hu , Chanwoo Lee , Miaoyan Wang

Learning good feature embeddings for images often requires substantial training data. As a consequence, in settings where training data is limited (e.g., few-shot and zero-shot learning), we are typically forced to use a generic feature…

Computer Vision and Pattern Recognition · Computer Science 2019-04-15 Xin Wang , Fisher Yu , Ruth Wang , Trevor Darrell , Joseph E. Gonzalez

Attributed networks are ubiquitous since a network often comes with auxiliary attribute information e.g. a social network with user profiles. Attributed Network Embedding (ANE) has recently attracted considerable attention, which aims to…

Social and Information Networks · Computer Science 2019-06-07 Chengbin Hou , Shan He , Ke Tang

Modern inference and learning often hinge on identifying low-dimensional structures that approximate large scale data. Subspace clustering achieves this through a union of linear subspaces. However, in contemporary applications data is…

Machine Learning · Computer Science 2018-08-03 Daniel L. Pimentel-Alarcón , Usman Mahmood

Node embeddings are a powerful tool in the analysis of networks; yet, their full potential for the important task of node clustering has not been fully exploited. In particular, most state-of-the-art methods generating node embeddings of…

Social and Information Networks · Computer Science 2022-02-24 Yixuan He , Gesine Reinert , Songchao Wang , Mihai Cucuringu

Learning representations of well-trained neural network models holds the promise to provide an understanding of the inner workings of those models. However, previous work has either faced limitations when processing larger networks or was…

Machine Learning · Computer Science 2024-06-17 Konstantin Schürholt , Michael W. Mahoney , Damian Borth

Kernel conditional mean embeddings (CMEs) offer a powerful framework for representing conditional distribution, but they often face scalability and expressiveness challenges. In this work, we propose a new method that effectively combines…

Machine Learning · Statistics 2024-03-19 Eiki Shimizu , Kenji Fukumizu , Dino Sejdinovic

Visualizing high-dimensional data is an essential task in Data Science and Machine Learning. The Centroid-Encoder (CE) method is similar to the autoencoder but incorporates label information to keep objects of a class close together in the…

Machine Learning · Computer Science 2020-03-03 Tomojit Ghosh , Michael Kirby

Today's densely instrumented world offers tremendous opportunities for continuous acquisition and analysis of multimodal sensor data providing temporal characterization of an individual's behaviors. Is it possible to efficiently couple such…

Machine Learning · Computer Science 2018-09-03 Homa Hosseinmardi , Amir Ghasemian , Shrikanth Narayanan , Kristina Lerman , Emilio Ferrara

Semi-supervised symmetric non-negative matrix factorization (SNMF) utilizes the available supervisory information (usually in the form of pairwise constraints) to improve the clustering ability of SNMF. The previous methods introduce the…

Machine Learning · Computer Science 2024-10-29 Yuheng Jia , Jia-Nan Li , Wenhui Wu , Ran Wang