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The plasticity of amorphous solids undergoing shear is characterized by quasi-localized rearrangements of particles. While many models of plasticity exist, the precise relationship between plastic dynamics and the structure of a particle's…

Soft Condensed Matter · Physics 2024-06-12 Jason W. Rocks , Sean A. Ridout , Andrea J. Liu

In amorphous materials, plasticity is localized and occurs as shear transformations. It was recently shown by Wu et al. that these shear transformations can be predicted by applying topological defect concepts developed for liquid crystals…

Mesoscale and Nanoscale Physics · Physics 2024-01-17 Paul Desmarchelier , Spencer Fajardo , Michael L. Falk

Dense Associative Memories or Modern Hopfield Networks have many appealing properties of associative memory. They can do pattern completion, store a large number of memories, and can be described using a recurrent neural network with a…

Neural and Evolutionary Computing · Computer Science 2021-07-29 Dmitry Krotov

Understanding conformational change is crucial for programming and controlling the function of many mechanical systems such as allosteric enzymes and tunable metamaterials. Of particular interest is the relationship between the network…

Computational Physics · Physics 2019-07-24 Jason Z. Kim , Zhixin Lu , Steven H. Strogatz , Danielle S. Bassett

The ability to reroute and control flow is vital to the function of venation networks across a wide range of organisms. By modifying individual edges in these networks, either by adjusting edge conductances or creating and destroying edges,…

Soft Condensed Matter · Physics 2021-01-14 Jason W. Rocks , Andrea J. Liu , Eleni Katifori

The Preisach model has been useful as a null-model for understanding memory formation in periodically driven disordered systems. In amorphous solids for example, the athermal response to shear is due to localized plastic events (soft…

Soft Condensed Matter · Physics 2020-07-16 M. Mert Terzi , Muhittin Mungan

The structural complexity of soft gels is at the origin of a versatile mechanical response that allows for large deformations, controlled elastic recovery and toughness in the same material. A limit to exploiting the potential of such…

Soft Condensed Matter · Physics 2017-10-06 Mehdi Bouzid , Emanuela Del Gado

Recent experiments and simulations of amorphous solids plastically deformed by oscillatory drive have foundsurprising behavior - for small strain amplitudes the dynamics can be reversible, which is contrary to the usual notion of plasticity…

Soft Condensed Matter · Physics 2021-07-07 Ido Regev , Ido Attia , Karin Dahmen , Srikanth Sastry , Muhittin Mungan

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

Neurons and Cognition · Quantitative Biology 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

A disordered material that cannot relax to equilibrium, such as an amorphous or glassy solid, responds to deformation in a way that depends on its past. In experiments we train a 2D athermal amorphous solid with oscillatory shear, and show…

Soft Condensed Matter · Physics 2020-01-28 Nathan C. Keim , Jacob Hass , Brian Kroger , Devin Wieker

The topology of social networks can be understood as being inherently dynamic, with edges having a distinct position in time. Most characterizations of dynamic networks discretize time by converting temporal information into a sequence of…

Data Analysis, Statistics and Probability · Physics 2012-12-03 Aaron Clauset , Nathan Eagle

In this study, we performed comprehensive morphological investigations of the spontaneous formations of effective network structures among elements in coupled logistic maps, specifically with a delayed connection change. Our proposed model…

Adaptation and Self-Organizing Systems · Physics 2020-12-02 Amika Ohara , Masashi Fujii , Akinori Awazu

Local rearrangements are the elements of plastic deformation in an amorphous solid. In oscillatory shear, they can switch reversibly between two distinct configurations. While these repeating relaxations are typically considered in the…

Soft Condensed Matter · Physics 2025-12-22 Zhicheng Wang , Nathan C. Keim

We describe a simple adaptive network of coupled chaotic maps. The network reaches a stationary state (frozen topology) for all values of the coupling parameter, although the dynamics of the maps at the nodes of the network can be…

Adaptation and Self-Organizing Systems · Physics 2015-06-19 V. Botella-Soler , P. Glendinning

Many real-world networks are directed, sparse and hierarchical, with a mixture of feed-forward and feedback connections with respect to the hierarchy. Moreover, a small number of 'master' nodes are often able to drive the whole system. We…

Disordered Systems and Neural Networks · Physics 2022-06-22 Niall Rodgers , Peter Tino , Samuel Johnson

The mechanical behavior of disordered materials such as dense suspensions, glasses or granular materials depends on their thermal and mechanical past. Here we report the memory behavior of a quenched mesoscopic elasto-plastic (QMEP) model.…

Soft Condensed Matter · Physics 2024-09-13 Dheeraj Kumar , Muhittin Mungan , Sylvain Patinet , Damien Vandembroucq

Functional brain connectivity changes dynamically over time, making its representation challenging for learning on non-Euclidean data. We present a framework that encodes dynamic functional connectivity as an image representation of…

Neurons and Cognition · Quantitative Biology 2025-11-14 Peilin He , Tananun Songdechakraiwut

To provide a phenomenological theory for the various interesting transitions in restructuring networks we employ a statistical mechanical approach with detailed balance satisfied for the transitions between topological states. This enables…

Statistical Mechanics · Physics 2007-05-23 Imre Derenyi , Illes Farkas , Gergely Palla , Tamas Vicsek

Under sufficient permanent random covalent bonding, a fluid of atoms or small molecules is transformed into an amorphous solid network. Being amorphous, local structural properties in such networks vary across the sample. A natural order…

Disordered Systems and Neural Networks · Physics 2009-10-31 Konstantin A. Shakhnovich , Paul M. Goldbart

Seeking effective neural networks is a critical and practical field in deep learning. Besides designing the depth, type of convolution, normalization, and nonlinearities, the topological connectivity of neural networks is also important.…

Computer Vision and Pattern Recognition · Computer Science 2020-08-20 Kun Yuan , Quanquan Li , Jing Shao , Junjie Yan
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