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Phylogenetic networks are a type of leaf-labelled, acyclic, directed graph used by biologists to represent the evolutionary history of species whose past includes reticulation events. A phylogenetic network is tree-child if each non-leaf…

Combinatorics · Mathematics 2017-11-27 Magnus Bordewich , Katharina T Huber , Vincent Moulton , Charles Semple

This paper describes characteristic features of networks reconstructed from gene expression time series data. Several null models are considered in order to discriminate between informations embedded in the network that are related to real…

Genomics · Quantitative Biology 2015-06-26 D. Remondini , N. Neretti , J. M. Sedivy , C. Franceschi , L. Milanesi , P. Tieri , G. C. Castellani

Trees have long been used as a graphical representation of species relationships. However complex evolutionary events, such as genetic reassortments or hybrid speciations which occur commonly in viruses, bacteria and plants, do not fit into…

Populations and Evolution · Quantitative Biology 2017-07-24 Sebastien Roch , Kun-Chieh Wang

Graph-structured data such as social networks, functional brain networks, gene regulatory networks, communications networks have brought the interest in generalizing deep learning techniques to graph domains. In this paper, we are…

Machine Learning · Computer Science 2018-04-25 Xavier Bresson , Thomas Laurent

We consider the natural problem of learning a ReLU network from queries, which was recently remotivated by model extraction attacks. In this work, we present a polynomial-time algorithm that can learn a depth-two ReLU network from queries…

Machine Learning · Computer Science 2023-03-07 Amit Daniely , Elad Granot

Currently, most deep learning methods cannot solve the problem of scarcity of industrial product defect samples and significant differences in characteristics. This paper proposes an unsupervised defect detection algorithm based on a…

Computer Vision and Pattern Recognition · Computer Science 2022-12-27 Chao Hu , Jian Yao , Weijie Wu , Weibin Qiu , Liqiang Zhu

Generative flow networks (GFlowNets) are amortized variational inference algorithms that are trained to sample from unnormalized target distributions over compositional objects. A key limitation of GFlowNets until this time has been that…

We study computational and sample complexity of parameter and structure learning in graphical models. Our main result shows that the class of factor graphs with bounded factor size and bounded connectivity can be learned in polynomial time…

Machine Learning · Computer Science 2012-07-09 Pieter Abbeel , Daphne Koller , Andrew Y. Ng

A major problem in the study of complex socioeconomic systems is represented by privacy issues$-$that can put severe limitations on the amount of accessible information, forcing to build models on the basis of incomplete knowledge. In this…

The success of graph embeddings or node representation learning in a variety of downstream tasks, such as node classification, link prediction, and recommendation systems, has led to their popularity in recent years. Representation learning…

Machine Learning · Computer Science 2018-09-07 Saba A. Al-Sayouri , Danai Koutra , Evangelos E. Papalexakis , Sarah S. Lam

Turbulence is a complex phenomenon that has a chaotic nature with multiple spatio-temporal scales, making predictions of turbulent flows a challenging topic. Nowadays, an abundance of high-fidelity databases can be generated by experimental…

Fluid Dynamics · Physics 2022-08-12 Mustafa Z. Yousif , Linqi Yu , Sergio Hoyas , Ricardo Vinuesa , HeeChang Lim

Many learning tasks require observing a sequence of images and making a decision. In a transportation problem of designing and planning for shipping boxes between nodes, we show how to treat the network of nodes and the flows between them…

Machine Learning · Statistics 2023-06-12 Brayan Ortiz , Amitabh Sinha

Complex systems, ranging from soft materials to wireless communication, are often organised as random geometric networks in which nodes and edges evenly fill up the volume of some space. Studying such networks is difficult because they…

Probability · Mathematics 2022-07-19 Ivan Kryven , Rik Versendaal

Learned image reconstruction has become a pillar in computational imaging and inverse problems. Among the most successful approaches are learned iterative networks, which are formulated by unrolling classical iterative optimisation…

Image and Video Processing · Electrical Eng. & Systems 2025-12-10 Andreas Hauptmann , Ozan Öktem

Resource-efficient convolution neural networks enable not only the intelligence on edge devices but also opportunities in system-level optimization such as scheduling. In this work, we aim to improve the performance of resource-constrained…

Computer Vision and Pattern Recognition · Computer Science 2018-10-19 Ting-Wu Chin , Cha Zhang , Diana Marculescu

The problem of neural network association is to retrieve a previously memorized pattern from its noisy version using a network of neurons. An ideal neural network should include three components simultaneously: a learning algorithm, a large…

Neural and Evolutionary Computing · Computer Science 2012-06-22 Amir Hesam Salavati , Amin Karbasi

Structured pruning is a popular method for compressing a neural network: given a large trained network, one alternates between removing channel connections and fine-tuning; reducing the overall width of the network. However, the efficacy of…

Machine Learning · Statistics 2019-06-10 Elliot J. Crowley , Jack Turner , Amos Storkey , Michael O'Boyle

Modeling generative process of growing graphs has wide applications in social networks and recommendation systems, where cold start problem leads to new nodes isolated from existing graph. Despite the emerging literature in learning graph…

Machine Learning · Computer Science 2019-06-03 Da Xu , Chuanwei Ruan , Kamiya Motwani , Evren Korpeoglu , Sushant Kumar , Kannan Achan

The evolutionary processes of complex systems contain critical information regarding their functional characteristics. The generation time of edges provides insights into the historical evolution of various networked complex systems, such…

Artificial Intelligence · Computer Science 2025-01-14 En Xu , Can Rong , Jingtao Ding , Yong Li

The connections in many networks are not merely binary entities, either present or not, but have associated weights that record their strengths relative to one another. Recent studies of networks have, by and large, steered clear of such…

Statistical Mechanics · Physics 2009-11-10 M. E. J. Newman