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We present a short tutorial and introduction to using the R package TDA, which provides some tools for Topological Data Analysis. In particular, it includes implementations of functions that, given some data, provide topological information…

Mathematical Software · Computer Science 2015-01-30 Brittany Terese Fasy , Jisu Kim , Fabrizio Lecci , Clément Maria

Reproducibility is increasingly important to statistical research, but many details are often omitted from the published version of complex statistical analyses. A reader's comprehension is limited to what the author concludes, without…

Computation · Statistics 2015-04-17 Dana Udwin , Ben Baumer

The growing availability of data and computing power fuels the development of predictive models. In order to ensure the safe and effective functioning of such models, we need methods for exploration, debugging, and validation. New methods…

Machine Learning · Computer Science 2021-03-30 Szymon Maksymiuk , Alicja Gosiewska , Przemyslaw Biecek

Monitoring data while it is processed and transformed can yield detailed insight into the dynamics of a (running) production system. The lumberjack package is a lightweight package allowing users to follow how an R object is transformed as…

Computation · Statistics 2025-12-30 Mark P. J. van der Loo

The synthpop package for R https://www.synthpop.org.uk provides tools to allow data custodians to create synthetic versions of confidential microdata that can be distributed with fewer restrictions than the original. The synthesis can be…

Computation · Statistics 2021-11-16 Gillian M Raab , Beata Nowok , Chris Dibben

The increasingly sophisticated environment in which attackers operate makes software security an even greater challenge in open-source projects, where malicious packages are prevalent. Static analysis tools, such as Malcontent, are highly…

Cryptography and Security · Computer Science 2026-01-27 Duc-Ly Vu , Thanh-Cong Nguyen , Minh-Khanh Vu , Ngoc-Thanh Nguyen , Kim-Anh Do Thi

The capability of R to do symbolic mathematics is enhanced by the caracas package. This package uses the Python computer algebra library SymPy as a back-end but caracas is tightly integrated in the R environment. This enables the R user…

Applications · Statistics 2023-08-22 Mikkel Meyer Andersen , Søren Højsgaard

The simulator is an R package that streamlines the process of performing simulations by creating a common infrastructure that can be easily used and reused across projects. Methodological statisticians routinely write simulations to compare…

Computation · Statistics 2016-07-04 Jacob Bien

Robust estimation provides essential tools for analyzing data that contain outliers, ensuring that statistical models remain reliable even in the presence of some anomalous data. While robust methods have long been available in R, users of…

Computation · Statistics 2024-11-05 Sarah Leyder , Jakob Raymaekers , Peter J. Rousseeuw , Thomas Servotte , Tim Verdonck

Multi-Criteria Decision Making (MCDM) is a branch of operations research used in a variety of domains from health care to engineering to facilitate decision-making among multiple options based on specific criteria. Several R packages have…

Mathematical Software · Computer Science 2025-02-14 Annice Najafi , Shokoufeh Mirzaei

R and Python are among the most popular languages used in many critical data analytics tasks. However, we still do not fully understand the capabilities of these two languages w.r.t. bugs encountered in data analytics tasks. What type of…

Software Engineering · Computer Science 2023-06-16 Shibbir Ahmed , Mohammad Wardat , Hamid Bagheri , Breno Dantas Cruz , Hridesh Rajan

R is a programming language and environment that is a central tool in the applied sciences for writing program. Its impact on the development of modern statistics is inevitable. Current research, especially for big data may not be done…

Computation · Statistics 2017-09-21 Saeid Amiri

When performing an aggregate data meta-analysis of a continuous outcome, researchers often come across primary studies that report the sample median of the outcome. However, standard meta-analytic methods typically cannot be directly…

In Software Engineering, some of the most critical activities are maintenance and evolution. However, to perform both with quality, minimizing impacts and risks, developers need to analyze and identify where the main problems come from…

Software Engineering · Computer Science 2020-08-11 Guilherme Lacerda , Fabio Petrillo , Marcelo Pimenta

R is a language and environment for statistical computing and graphics, which provides a wide variety of statistical tools (modeling, statistical testing, time series analysis, classification problems, machine learning, ...), together with…

Other Statistics · Statistics 2023-06-22 M. Isabel Parra , Eva L. Sanjuán , M. Carmen Robustillo , Mario M. Pizarro

With the emergence of a new pandemic worldwide, a novel strategy to approach it has emerged. Several initiatives under the umbrella of "open science" are contributing to tackle this unprecedented situation. In particular, the "R Language…

Computers and Society · Computer Science 2021-04-21 Marcelo Ponce , Amit Sandhel

For scientific knowledge to be findable, accessible, interoperable, and reusable, it needs to be machine-readable. Moving forward from post-publication extraction of knowledge, we adopted a pre-publication approach to write research…

Digital Libraries · Computer Science 2025-12-12 Olga Lezhnina , Manuel Prinz , Markus Stocker

Mediation analysis is one of the most widely used statistical techniques in the social, behavioral, and medical sciences. Mediation models allow to study how an independent variable affects a dependent variable indirectly through one or…

Computation · Statistics 2022-08-18 Andreas Alfons , Nüfer Y. Ateş , Patrick J. F. Groenen

The advent of miniaturized biologging devices has provided ecologists with unprecedented opportunities to record animal movement across scales, and led to the collection of ever-increasing quantities of tracking data. In parallel,…

Quantitative Methods · Quantitative Biology 2019-10-16 Rocio Joo , Matthew E. Boone , Thomas A. Clay , Samantha C. Patrick , Susana Clusella-Trullas , Mathieu Basille

The advancement of scientific knowledge increasingly depends on ensuring that data-driven research is reproducible: that two people with the same data obtain the same results. However, while the necessity of reproducibility is clear, there…

Computers and Society · Computer Science 2020-08-28 Audrey M. Bertin , Benjamin S. Baumer