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We present a new approach to e-matching based on relational join; in particular, we apply recent database query execution techniques to guarantee worst-case optimal run time. Compared to the conventional backtracking approach that always…

Databases · Computer Science 2022-01-07 Yihong Zhang , Yisu Remy Wang , Max Willsey , Zachary Tatlock

We investigate applying general-purpose join algorithms to the triangle listing problem in an out-of-core context. In particular, we focus on Leapfrog Triejoin (LFTJ) by Veldhuizen 2014, a recently proposed, worst-case optimal algorithm. We…

Databases · Computer Science 2015-01-28 Daniel Zinn

Graph pattern matching, which aims to discover structural patterns in graphs, is considered one of the most fundamental graph mining problems in many real applications. Despite previous efforts, existing systems face two main challenges.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-30 Tianhui Shi , Mingshu Zhai , Yi Xu , Jidong Zhai

Graph clustering has many important applications in computing, but due to growing sizes of graphs, even traditionally fast clustering methods such as spectral partitioning can be computationally expensive for real-world graphs of interest.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-06-11 Julian Shun , Farbod Roosta-Khorasani , Kimon Fountoulakis , Michael W. Mahoney

A hypergraph is a generalization of a graph, in which a hyperedge can connect multiple vertices, modeling complex relationships involving multiple vertices simultaneously. Hypergraph pattern matching, which is to find all isomorphic…

Databases · Computer Science 2025-12-23 Siwoo Song , Wonseok Shin , Kunsoo Park , Giuseppe F. Italiano , Zhengyi Yang , Wenjie Zhang

Applications with low data reuse and frequent irregular memory accesses, such as graph or sparse linear algebra workloads, fail to scale well due to memory bottlenecks and poor core utilization. While prior work with prefetching,…

Hardware Architecture · Computer Science 2023-05-05 Marcelo Orenes-Vera , Esin Tureci , David Wentzlaff , Margaret Martonosi

Genome sequence alignment is the core of many biological applications. The advancement of sequencing technologies produces a tremendous amount of data, making sequence alignment a critical bottleneck in bioinformatics analysis. The existing…

Hardware Architecture · Computer Science 2023-01-26 Weihong Xu , Saransh Gupta , Niema Moshiri , Tajana Rosing

Similarity joins are a fundamental database operation. Given data sets S and R, the goal of a similarity join is to find all points x in S and y in R with distance at most r. Recent research has investigated how locality-sensitive hashing…

Data Structures and Algorithms · Computer Science 2018-04-17 Samuel McCauley , Francesco Silvestri

We study three-way joins on MapReduce. Joins are very useful in a multitude of applications from data integration and traversing social networks, to mining graphs and automata-based constructions. However, joins are expensive, even for…

Databases · Computer Science 2014-05-19 Ben Kimmett , Alex Thomo , S. Venkatesh

Graph pattern matching is a fundamental problem encountered by many common graph mining tasks and the basic building block of several graph mining systems. This paper explores for the first time how to proactively prune graphs to speed up…

Databases · Computer Science 2024-03-05 Juelin Liu , Sandeep Polisetty , Hui Guan , Marco Serafini

Recent years have seen exciting developments in join algorithms. In 2008, Atserias, Grohe and Marx (henceforth AGM) proved a tight bound on the maximum result size of a full conjunctive query, given constraints on the input relation sizes.…

Databases · Computer Science 2013-12-23 Todd L. Veldhuizen

Joint space trajectory optimization under end-effector task constraints leads to a challenging non-convex problem. Thus, a real-time adaptation of prior computed trajectories to perturbation in task constraints often becomes intractable.…

Complex networks are relational data sets commonly represented as graphs. The analysis of their intricate structure is relevant to many areas of science and commerce, and data sets may reach sizes that require distributed storage and…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-05 Jannis Koch , Christian L. Staudt , Maximilian Vogel , Henning Meyerhenke

We introduce TeraHAC, a $(1+\epsilon)$-approximate hierarchical agglomerative clustering (HAC) algorithm which scales to trillion-edge graphs. Our algorithm is based on a new approach to computing $(1+\epsilon)$-approximate HAC, which is a…

Data Structures and Algorithms · Computer Science 2024-06-12 Laxman Dhulipala , Jason Lee , Jakub Łącki , Vahab Mirrokni

Graphs are essential for representing relationships in various domains, driving modern AI applications such as graph analytics and neural networks across science, engineering, cybersecurity, transportation, and economics. However, the size…

Emerging Technologies · Computer Science 2024-04-05 William Shaddix , Mahyar Samani , Marjan Fariborz , S. J. Ben Yoo , Jason Lowe-Power , Venkatesh Akella

Triangle counting is a fundamental building block in graph algorithms. In this paper, we propose a block-based triangle counting algorithm to reduce data movement during both sequential and parallel execution. Our block-based formulation…

Data Structures and Algorithms · Computer Science 2020-09-29 Abdurrahman Yaşar , Sivasankaran Rajamanickam , Jonathan Berry , Ümit V. Çatalyürek

Dynamic Connectivity is a fundamental algorithmic graph problem, motivated by a wide range of applications to social and communication networks and used as a building block in various other algorithms, such as the bi-connectivity and the…

Data Structures and Algorithms · Computer Science 2021-05-19 Alexander Fedorov , Nikita Koval , Dan Alistarh

Graph pattern matching is a fundamental operation for the analysis and exploration ofdata graphs. In thispaper, we presenta novel approachfor efficiently finding homomorphic matches for hybrid graph patterns, where each pattern edge may be…

Databases · Computer Science 2022-09-29 Xiaoying Wu , Dimitri Theodoratos , Nikos Mamoulis , Michael Lan

Evolutionary computation has been shown to be a highly effective method for training neural networks, particularly when employed at scale on CPU clusters. Recent work have also showcased their effectiveness on hardware accelerators, such as…

Neural and Evolutionary Computing · Computer Science 2022-04-07 Yujin Tang , Yingtao Tian , David Ha

Hypergraphs, which use hyperedges to capture groupwise interactions among different entities, have gained increasing attention recently for their versatility in effectively modeling real-world networks. In this paper, we study the problem…

Data Structures and Algorithms · Computer Science 2025-04-04 Haozhe Yin , Kai Wang , Wenjie Zhang , Ying Zhang , Ruijia Wu , Xuemin Lin