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In recent years there has been a rapid increase in classification methods on graph structured data. Both in graph kernels and graph neural networks, one of the implicit assumptions of successful state-of-the-art models was that…

Machine Learning · Computer Science 2019-11-01 Sergei Ivanov , Sergei Sviridov , Evgeny Burnaev

Machine learning on graphs has made substantial progress across domains such as molecular property prediction and chip design. Yet benchmarking practices remain fragmented, often relying on narrow, task-specific datasets and inconsistent…

Most existing popular methods for learning graph embedding only consider fixed-order global structural features and lack structures hierarchical representation. To address this weakness, we propose a novel graph embedding algorithm named…

Machine Learning · Computer Science 2021-02-03 Xue Liu , Wei Wei , Xiangnan Feng , Xiaobo Cao , Dan Sun

Graph neural networks (GNNs) have attracted much attention due to their ability to leverage the intrinsic geometries of the underlying data. Although many different types of GNN models have been developed, with many benchmarking procedures…

Graph-level regression underpins many real-world applications, yet public benchmarks remain heavily skewed toward molecular graphs and citation networks. This limited diversity hinders progress on models that must generalize across both…

Machine Learning · Computer Science 2026-05-04 Peter Samoaa , Marcus Vukojevic , Morteza Haghir Chehreghani , Antonio Longa

Recently, there has been an increasing interest in (supervised) learning with graph data, especially using graph neural networks. However, the development of meaningful benchmark datasets and standardized evaluation procedures is lagging,…

Machine Learning · Computer Science 2020-07-20 Christopher Morris , Nils M. Kriege , Franka Bause , Kristian Kersting , Petra Mutzel , Marion Neumann

The development of scalable, representative, and widely adopted benchmarks for graph data systems have been a question for which answers has been sought for decades. We conduct an in-depth study of the existing literature on benchmarks for…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-23 Miyuru Dayarathna , Toyotaro Suzumura

Recent works on representation learning for graph structured data predominantly focus on learning distributed representations of graph substructures such as nodes and subgraphs. However, many graph analytics tasks such as graph…

Artificial Intelligence · Computer Science 2017-07-18 Annamalai Narayanan , Mahinthan Chandramohan , Rajasekar Venkatesan , Lihui Chen , Yang Liu , Shantanu Jaiswal

Deep graph learning has gained grand popularity over the past years due to its versatility and success in representing graph data across a wide range of domains. However, the pervasive issue of imbalanced graph data distributions, where…

Machine Learning · Computer Science 2025-03-04 Jiawen Qin , Haonan Yuan , Qingyun Sun , Lyujin Xu , Jiaqi Yuan , Pengfeng Huang , Zhaonan Wang , Xingcheng Fu , Hao Peng , Jianxin Li , Philip S. Yu

We present the Open Graph Benchmark (OGB), a diverse set of challenging and realistic benchmark datasets to facilitate scalable, robust, and reproducible graph machine learning (ML) research. OGB datasets are large-scale, encompass multiple…

Machine Learning · Computer Science 2021-02-26 Weihua Hu , Matthias Fey , Marinka Zitnik , Yuxiao Dong , Hongyu Ren , Bowen Liu , Michele Catasta , Jure Leskovec

Graph data management is instrumental for several use cases such as recommendation, root cause analysis, financial fraud detection, and enterprise knowledge representation. Efficiently supporting these use cases yields a number of unique…

Graph classification benchmarks, vital for assessing and developing graph neural networks (GNNs), have recently been scrutinized, as simple methods like MLPs have demonstrated comparable performance. This leads to an important question: Do…

Machine Learning · Computer Science 2024-08-14 Zhengdao Li , Yong Cao , Kefan Shuai , Yiming Miao , Kai Hwang

Graphs are nowadays ubiquitous in the fields of signal processing and machine learning. As a tool used to express relationships between objects, graphs can be deployed to various ends: I) clustering of vertices, II) semi-supervised…

Machine Learning · Computer Science 2020-07-17 Carlos Lassance , Vincent Gripon , Gonzalo Mateos

Graph machine learning has enjoyed a meteoric rise in popularity since the introduction of deep learning in graph contexts. This is no surprise due to the ubiquity of graph data in large scale industrial settings. Tacitly assumed in all…

Machine Learning · Computer Science 2024-12-10 Isay Katsman , Ethan Lou , Anna Gilbert

Graph-structured data is prevalent in domains such as social networks, financial transactions, brain networks, and protein interactions. As a result, the research community has produced new databases and analytics engines to process such…

Databases · Computer Science 2024-04-02 Puneet Mehrotra , Vaastav Anand , Daniel Margo , Milad Rezaei Hajidehi , Margo Seltzer

We propose a new graph-theoretic benchmark in this paper. The benchmark is developed to address shortcomings of an existing widely-used graph benchmark. We thoroughly studied a large number of traditional and contemporary graph algorithms…

Performance · Computer Science 2010-05-06 Andy B. Yoo , Yang Liu , Sheila Vaidya , Stephen Poole

Benchmark datasets have proved pivotal to the success of graph learning, and good benchmark datasets are crucial to guide the development of the field. Recent research has highlighted problems with graph-learning datasets and benchmarking…

Machine Learning · Computer Science 2025-08-21 Corinna Coupette , Jeremy Wayland , Emily Simons , Bastian Rieck

The rise of graph analytic systems has created a need for ways to measure and compare the capabilities of these systems. Graph analytics present unique scalability difficulties. The machine learning, high performance computing, and visual…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-07 Siddharth Samsi , Vijay Gadepally , Michael Hurley , Michael Jones , Edward Kao , Sanjeev Mohindra , Paul Monticciolo , Albert Reuther , Steven Smith , William Song , Diane Staheli , Jeremy Kepner

Graph serves as a powerful tool for modeling data that has an underlying structure in non-Euclidean space, by encoding relations as edges and entities as nodes. Despite developments in learning from graph-structured data over the years, one…

Machine Learning · Computer Science 2022-12-20 Tianxiang Zhao , Dongsheng Luo , Xiang Zhang , Suhang Wang

This paper studies the problem of graph-level clustering, which is a novel yet challenging task. This problem is critical in a variety of real-world applications such as protein clustering and genome analysis in bioinformatics. Recent years…

Machine Learning · Computer Science 2023-03-09 Wei Ju , Yiyang Gu , Binqi Chen , Gongbo Sun , Yifang Qin , Xingyuming Liu , Xiao Luo , Ming Zhang
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