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Molecular interactions have widely been modelled as networks. The local wiring patterns around molecules in molecular networks are linked with their biological functions. However, networks model only pairwise interactions between molecules…

Molecular Networks · Quantitative Biology 2018-09-21 Thomas Gaudelet , Noel Malod-Dognin , Natasa Przulj

This study poses the feature correspondence problem as a hypergraph node labeling problem. Candidate feature matches and their subsets (usually of size larger than two) are considered to be the nodes and hyperedges of a hypergraph. A…

Computer Vision and Pattern Recognition · Computer Science 2011-07-14 Toufiq Parag , Vladimir Pavlovic , Ahmed Elgammal

Many biological and social systems are naturally represented as edge-weighted directed or undirected hypergraphs since they exhibit group interactions involving three or more system units as opposed to pairwise interactions that can be…

Social and Information Networks · Computer Science 2025-04-25 Prithviraj Sengupta , Nazanin Azarhooshang , Reka Albert , Bhaskar DasGupta

Motivated by applications in domains such as social networks and computational biology, we study the problem of community recovery in graphs with locality. In this problem, pairwise noisy measurements of whether two nodes are in the same…

Information Theory · Computer Science 2016-06-02 Yuxin Chen , Govinda Kamath , Changho Suh , David Tse

Hypergraphs are higher-order networks that capture the interactions between two or more nodes. Hypergraphs can always be represented by factor graphs, i.e. bipartite networks between nodes and factor nodes (representing groups of nodes).…

Disordered Systems and Neural Networks · Physics 2024-10-08 Ginestra Bianconi , Sergey N. Dorogovtsev

We study a well known noisy model of the graph isomorphism problem. In this model, the goal is to perfectly recover the vertex correspondence between two edge-correlated Erd\H{o}s-R\'{e}nyi random graphs, with an initial seed set of…

Machine Learning · Computer Science 2018-07-27 Elchanan Mossel , Jiaming Xu

We propose high-order hypergraph walks as a framework to generalize graph-based network science techniques to hypergraphs. Edge incidence in hypergraphs is quantitative, yielding hypergraph walks with both length and width. Graph methods…

Physics and Society · Physics 2020-06-09 Sinan G. Aksoy , Cliff Joslyn , Carlos Ortiz Marrero , Brenda Praggastis , Emilie Purvine

Lying at the interface between Network Science and Machine Learning, node embedding algorithms take a graph as input and encode its structure onto output vectors that represent nodes in an abstract geometric space, enabling various…

Physics and Society · Physics 2025-10-03 Riccardo Milocco , Fabian Jansen , Diego Garlaschelli

We study community recovery in the planted partition model in regimes where the number and sizes of communities may vary arbitrarily with the number of vertices. In such highly unbalanced settings, standard accuracy or overlap-based metrics…

Probability · Mathematics 2026-03-05 Martijn Gösgens , Maximilien Dreveton

With a core-periphery structure of networks, core nodes are densely interconnected, peripheral nodes are connected to core nodes to different extents, and peripheral nodes are sparsely interconnected. Core-periphery structure composed of a…

Physics and Society · Physics 2017-11-23 Sadamori Kojaku , Naoki Masuda

The relations, rather than the elements, constitute the structure of networks. We therefore develop a systematic approach to the analysis of networks, modelled as graphs or hypergraphs, that is based on structural properties of…

Discrete Mathematics · Computer Science 2020-12-08 Marzieh Eidi , Amirhossein Farzam , Wilmer Leal , Areejit Samal , Jürgen Jost

We consider the problem of identifying the densest k-node subgraph in a given graph. We write this problem as an instance of rank-constrained cardinality minimization and then relax using the nuclear and 11 norms. Although the original…

Optimization and Control · Mathematics 2015-05-19 Brendan P. W. Ames

Grouping the nodes of a graph into clusters is a standard technique for studying networks. We study a problem where we are given a directed network and are asked to partition the graph into a sequence of coherent groups. We assume that…

Social and Information Networks · Computer Science 2025-12-08 Iiro Kumpulainen , Nikolaj Tatti

Consider a $d$-uniform random hypergraph on $n$ vertices in which hyperedges are included iid so that the average degree is $n^\delta$. The projection of a hypergraph is a graph on the same $n$ vertices where an edge connects two vertices…

Combinatorics · Mathematics 2025-02-24 Guy Bresler , Chenghao Guo , Yury Polyanskiy , Andrew Yao

Hypergraphs play a pivotal role in the modelling of data featuring higher-order relations involving more than two entities. Hypergraph neural networks emerge as a powerful tool for processing hypergraph-structured data, delivering…

Machine Learning · Computer Science 2024-06-04 Zexi Liu , Bohan Tang , Ziyuan Ye , Xiaowen Dong , Siheng Chen , Yanfeng Wang

We propose interpretable graph neural networks for sampling and recovery of graph signals, respectively. To take informative measurements, we propose a new graph neural sampling module, which aims to select those vertices that maximally…

Machine Learning · Computer Science 2020-11-04 Siheng Chen , Maosen Li , Ya Zhang

Hypergraphs are used to model higher-order interactions amongst agents and there exist many practically relevant instances of hypergraph datasets. To enable efficient processing of hypergraph-structured data, several hypergraph neural…

Machine Learning · Computer Science 2022-03-29 Eli Chien , Chao Pan , Jianhao Peng , Olgica Milenkovic

Executing Spiking Neural Networks (SNNs) on neuromorphic hardware poses the problem of mapping neurons to cores. SNNs operate by propagating spikes between neurons that form a graph through synapses. Neuromorphic hardware mimics them…

Hardware Architecture · Computer Science 2026-04-22 Marco Ronzani , Cristina Silvano

Multilayer networks provide a powerful framework for modeling complex systems that capture different types of interactions between the same set of entities across multiple layers. Core-periphery detection involves partitioning the nodes of…

Physics and Society · Physics 2025-05-08 Kai Bergermann , Francesco Tudisco

In recent years hypergraphs have emerged as a powerful tool to study systems with multi-body interactions which cannot be trivially reduced to pairs. While highly structured methods to generate synthetic data have proved fundamental for the…

Social and Information Networks · Computer Science 2024-10-10 Nicolò Ruggeri , Federico Battiston , Caterina De Bacco