Related papers: Transfer Learning for Scientific Data Chain Extrac…

Electronic Health Records are large repositories of valuable clinical data, with a significant portion stored in unstructured text format. This textual data includes clinical events (e.g., disorders, symptoms, findings, medications and…

Domain-specific Named Entity Recognition (NER), whose goal is to recognize domain-specific entities and their categories, provides an important support for constructing domain knowledge graphs. Currently, deep learning-based methods are…

Most current extractive summarization models generate summaries by selecting salient sentences. However, one of the problems with sentence-level extractive summarization is that there exists a gap between the human-written gold summary and…

Random graph models have been instrumental in characterizing complex networks, but chemical reaction networks (CRNs) are better represented as hypergraphs. Traditional models of random CRNs often reduce CRNs to bipartite graphs,…

This paper describes about information extraction system, which is an extension of the system developed by team Hitachi for "Disease/Disorder Template filling" task organized by ShARe/CLEF eHealth Evolution Lab 2014. In this extension…

The chemical reaction network (CRN) is a widely used formalism to describe macroscopic behavior of chemical systems. Available tools for CRN modelling and simulation require local access, installation, and often involve local file storage,…

Concept normalization in free-form texts is a crucial step in every text-mining pipeline. Neural architectures based on Bidirectional Encoder Representations from Transformers (BERT) have achieved state-of-the-art results in the biomedical…

The amount of archaeological literature is growing rapidly. Until recently, these data were only accessible through metadata search. We implemented a text retrieval engine for a large archaeological text collection ($\sim 658$ Million…

In this paper, we propose a new paradigm for the task of entity-relation extraction. We cast the task as a multi-turn question answering problem, i.e., the extraction of entities and relations is transformed to the task of identifying…

Accurate extraction of breast cancer patients' phenotypes is important for clinical decision support and clinical research. Current models do not take full advantage of cancer domain-specific corpus, whether pre-training Bidirectional…

We present a novel system that automatically extracts and generates informative and descriptive sentences from the biomedical corpus and facilitates the efficient search for relational knowledge. Unlike previous search engines or…

With increasing applications in areas such as biomedical information extraction pipelines and social media analytics, Named Entity Recognition (NER) has become an indispensable tool for knowledge extraction. However, with the gradual shift…

Retrieval-augmented generation (RAG) has emerged as a powerful framework for enhancing large language models (LLMs) with external knowledge, particularly in scientific domains that demand specialized and dynamic information. Despite its…

Joint entity and relation extraction is the fundamental task of information extraction, consisting of two subtasks: named entity recognition and relation extraction. However, most existing joint extraction methods suffer from issues of…

Building named entity recognition (NER) models for languages that do not have much training data is a challenging task. While recent work has shown promising results on cross-lingual transfer from high-resource languages to low-resource…

This paper proposes a structure-aware decoding method based on large language models to address the difficulty of traditional approaches in maintaining both semantic integrity and structural consistency in nested and overlapping entity…

A typical architecture for end-to-end entity linking systems consists of three steps: mention detection, candidate generation and entity disambiguation. In this study we investigate the following questions: (a) Can all those steps be…

Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different…

The use of machine learning in chemistry has become a common practice. At the same time, despite the success of modern machine learning methods, the lack of data limits their use. Using a transfer learning methodology can help solve this…

This paper focuses on the problem of unsupervised relation extraction. Existing probabilistic generative model-based relation extraction methods work by extracting sentence features and using these features as inputs to train a generative…