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Graph foundation models represent a transformative paradigm for learning transferable representations across diverse graph domains. Recent methods leverage large language models to unify graph and text modalities into a shared…

Machine Learning · Computer Science 2025-12-23 Heng Zhang , Tianyi Zhang , Yuling Shi , Xiaodong Gu , Yaomin Shen , Haochen You , Zijian Zhang , Yilei Yuan , Jin Huang

Structural parameters of graphs, such as treewidth, play a central role in the study of the parameterized complexity of graph problems. Motivated by the study of parametrized algorithms on phylogenetic networks, scanwidth was introduced…

Computational Complexity · Computer Science 2026-02-09 Jannik Schestag , Norbert Zeh

Graph Neural Networks (GNNs) have become the standard method for learning from networks across fields ranging from biology to social systems, yet a principled understanding of what enables them to extract meaningful representations, or why…

Machine Learning · Statistics 2026-03-19 Nil Ayday , Mahalakshmi Sabanayagam , Debarghya Ghoshdastidar

Graph polynomials encode fundamental combinatorial invariants of graphs. Their computation is investigated using tree and path decomposition frameworks, with formal definitions of treewidth, k-trees, and pathwidth establishing the…

Discrete Mathematics · Computer Science 2025-09-29 Mehul Bafna , Shaghik Amirian

Preference restrictions have played a significant role in computational social choice. This paper studies a framework that connects preference restrictions with classical graph search paradigms. We model candidates as vertices of a graph…

Computer Science and Game Theory · Computer Science 2026-05-07 Guozhen Rong , Xin Li , Yongjie Yang

Several query evaluation tasks can be done via knowledge compilation: the query result is compiled as a lineage circuit from which the answer can be determined. For such tasks, it is important to leverage some width parameters of the…

Databases · Computer Science 2022-12-16 Antoine Amarilli , Mikaël Monet , Pierre Senellart

Layered treewidth and row treewidth are recently introduced graph parameters that have been key ingredients in the solution of several well-known open problems. It follows from the definitions that the layered treewidth of a graph is at…

Combinatorics · Mathematics 2023-06-22 Prosenjit Bose , Vida Dujmović , Mehrnoosh Javarsineh , Pat Morin , David R. Wood

Square grids play a pivotal role in Robertson and Seymour's work on graph minors as planar obstructions to small treewidth. We introduce a three-sided bramble in a plane graph called a net, which generalizes the standard bramble of crosses…

Combinatorics · Mathematics 2017-06-28 Karen L. Collins , Brett C. Smith

In this article, we propose tree edit distance with variables, which is an extension of the tree edit distance to handle trees with variables and has a potential application to measuring the similarity between mathematical formulas,…

Data Structures and Algorithms · Computer Science 2021-05-12 Tatsuya Akutsu , Tomoya Mori , Naotoshi Nakamura , Satoshi Kozawa , Yuhei Ueno , Thomas N. Sato

Recent years have seen growing interest in learning disentangled representations, in which distinct features, such as size or shape, are represented by distinct neurons. Quantifying the extent to which a given representation is disentangled…

Machine Learning · Computer Science 2023-04-06 Louis Mahon , Lei Shah , Thomas Lukasiewicz

In this paper we prove a space lower bound of $n^{\Omega(k)}$ for non-deterministic (syntactic) read-once branching programs ({\sc nrobp}s) on functions expressible as {\sc cnf}s with treewidth at most $k$ of their primal graphs. This lower…

Computational Complexity · Computer Science 2015-07-28 Igor Razgon

In recent years, a wide variety of graph neural network (GNN) architectures have emerged, each with its own strengths, weaknesses, and complexities. Various techniques, including rewiring, lifting, and node annotation with centrality…

Machine Learning · Computer Science 2024-10-14 Zhifei Li , Gerrit Großmann , Verena Wolf

We prove that the (divisorial) gonality of a finite connected graph is lower bounded by its treewidth. We show that equality holds for grid graphs and complete multipartite graphs. We prove that the treewidth lower bound also holds for…

Combinatorics · Mathematics 2022-01-04 Josse van Dobben de Bruyn , Dion Gijswijt

We study two notions of being well-structured for classes of graphs that are inspired by classic model theory. A class of graphs $C$ is monadically stable if it is impossible to define arbitrarily long linear orders in vertex-colored graphs…

Discrete Mathematics · Computer Science 2020-07-16 Jaroslav Nesetril , Patrice Ossona de Mendez , Michal Pilipczuk , Roman Rabinovich , Sebastian Siebertz

Inspired by notorious combinatorial optimization problems on graphs, in this paper we consider a series of related problems defined using a metric space and topology determined by a graph. Particularly, we present the Independent Set,…

Combinatorics · Mathematics 2025-07-30 Alexander Grigoriev , Katherine Faulkner

For a tree decomposition $\mathcal{T}$ of a graph $G$, let $\mu(\mathcal{T})$ denote the maximum size of an induced matching in $G$ with the property that some bag of $\mathcal{T}$ contains at least one endpoint of every edge of the…

A graph class $\mathcal{C}$ has polynomial expansion if there is a polynomial function $f$ such that for every graph $G\in \mathcal{C}$, each of the depth-$r$ minors of $G$ has average degree at most $f(r)$. In this note, we study…

Combinatorics · Mathematics 2025-10-01 Nicolas Bousquet , Wouter Cames van Batenburg , Louis Esperet , Gwenaël Joret , Piotr Micek

Temporal graphs provide a useful model for many real-world networks. Unfortunately the majority of algorithmic problems we might consider on such graphs are intractable. There has been recent progress in defining structural parameters which…

Discrete Mathematics · Computer Science 2024-11-20 Jessica Enright , Samuel D. Hand , Laura Larios-Jones , Kitty Meeks

We give an analog of the Myhill-Nerode methods from formal language theory for hypergraphs and use it to derive the following results for two NP-hard hypergraph problems: * We provide an algorithm for testing whether a hypergraph has…

Discrete Mathematics · Computer Science 2016-01-12 René van Bevern , Rodney G. Downey , Michael R. Fellows , Serge Gaspers , Frances A. Rosamond

Despite much research, Graph Neural Networks (GNNs) still do not display the favorable scaling properties of other deep neural networks such as Convolutional Neural Networks and Transformers. Previous work has identified issues such as…

Machine Learning · Computer Science 2023-12-19 Ameen Ali , Hakan Cevikalp , Lior Wolf