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A single neuron receives an extensive array of synaptic inputs through its dendrites, raising the fundamental question of how these inputs undergo integration and summation, culminating in the initiation of spikes in the soma. Experimental…

Neurons and Cognition · Quantitative Biology 2025-04-30 Yuanhong Tang , Shanshan Jia , Tiejun Huang , Zhaofei Yu , Jian K. Liu

The relative importance of the intrinsic and extrinsic factors determining the variety of geometric shapes exhibited by dendritic trees remains unclear. This question was addressed by developing a model of the growth of dendritic trees…

Neurons and Cognition · Quantitative Biology 2007-05-23 Artur Luczak

Since they became observable, neuron morphologies have been informally compared with biological trees but they are studied by distinct communities, neuroscientists, and ecologists. The apparent structural similarity suggests there may be…

Neurons and Cognition · Quantitative Biology 2023-07-06 Roozbeh Farhoodi , Phil Wilkes , Anirudh M. Natarajan , Samantha Ing-Esteves , Julie L. Lefebvre , Mathias Disney , Konrad P. Kording

The complexity of a neuronal cell shape is known to be related to its function. Specifically, among other indicators, a decreased complexity in the dendritic trees of cortical pyramidal neurons has been associated with mental retardation.…

Quantitative Methods · Quantitative Biology 2007-05-23 M. S. Barbosa , L. da F. Costa , E. S. Bernardes , G. Ramakers , J. van Pelt

A dendritic spine is a very small structure (~0.1 {\mu}m$^3$) of a neuron that processes input timing information. Why are spines so small? Here, we provide functional reasons; the size of spines is optimal for information coding. Spines…

Molecular Networks · Quantitative Biology 2014-06-18 Takuya Koumura , Hidetoshi Urakubo , Kaoru Ohashi , Masashi Fujii , Shinya Kuroda

Computations on the dendritic trees of neurons have important constraints. Voltage dependent conductances in dendrites are not similar to arbitrary direct-current generation, they are the basis for dendritic nonlinearities and they do not…

Neurons and Cognition · Quantitative Biology 2021-08-12 Ilenna Simone Jones , Konrad Paul Kording

Brains can process sensory information from different modalities at astonishing speed; this is surprising as the integration of inputs through the membrane of each individual neuron already causes a delayed response. Neuronal recordings…

Neurons and Cognition · Quantitative Biology 2024-08-20 Simon Brandt , Mihai Alexandru Petrovici , Walter Senn , Katharina Anna Wilmes , Federico Benitez

Electrophysiological recordings of neural activity in a mouse's brain are very popular among neuroscientists for understanding brain function. One particular area of interest is acquiring recordings from the Purkinje cells in the cerebellum…

In this article, we review a class of neuro-mimetic computational models that we place under the label of spiking predictive coding. Specifically, we review the general framework of predictive processing in the context of neurons that emit…

Neurons and Cognition · Quantitative Biology 2024-09-10 Antony W. N'dri , William Gebhardt , Céline Teulière , Fleur Zeldenrust , Rajesh P. N. Rao , Jochen Triesch , Alexander Ororbia

There has been a strong push recently to examine biological scale simulations of neuromorphic algorithms to achieve stronger inference capabilities. This paper presents a set of piecewise linear spiking neuron models, which can reproduce…

Machine Learning · Computer Science 2012-12-18 Hamid Soleimani , Arash Ahmadi , Mohammad Bavandpour

Arbor is a software library designed for efficient simulation of large-scale networks of biological neurons with detailed morphological structures. It combines customizable neuronal and synaptic mechanisms with high-performance computing,…

Computational Engineering, Finance, and Science · Computer Science 2026-02-16 Jannik Luboeinski , Sebastian Schmitt , Shirin Shafiee , Thorsten Hater , Fabian Bösch , Christian Tetzlaff

Understanding how the dynamics of neural networks is shaped by the computations they perform is a fundamental question in neuroscience. Recently, the framework of efficient coding proposed a theory of how spiking neural networks can compute…

Neurons and Cognition · Quantitative Biology 2022-10-25 Veronika Koren , Stefano Panzeri

Deep learning models have proven to be exceptionally useful in performing many machine learning tasks. However, for each new dataset, choosing an effective size and structure of the model can be a time-consuming process of trial and error.…

Machine Learning · Computer Science 2019-08-08 Roozbeh Yousefzadeh , Dianne P O'Leary

The problem of neural coding is to understand how sequences of action potentials (spikes) are related to sensory stimuli, motor outputs, or (ultimately) thoughts and intentions. One clear question is whether the same coding rules are used…

Neuronal morphology is an essential element for brain activity and function. We take advantage of current availability of brain-wide neuron digital reconstructions of the Pyramidal cells from a mouse brain, and analyze several emergent…

Dynamical Systems · Mathematics 2018-10-09 Congping Lin , Yuanfei Huang , Tingwei Quan , Yiwei Zhang

The brain can efficiently learn a wide range of tasks, motivating the search for biologically inspired learning rules for improving current artificial intelligence technology. Most biological models are composed of point neurons, and cannot…

Neurons and Cognition · Quantitative Biology 2026-04-13 Cristiano Capone , Cosimo Lupo , Paolo Muratore , Pier Stanislao Paolucci

Supervised learning has long been attributed to several feed-forward neural circuits within the brain, with attention being paid to the cerebellar granular layer. The focus of this study is to evaluate the input activity representation of…

Neural and Evolutionary Computing · Computer Science 2020-03-04 Richard R Carrillo , Francisco Naveros , Eduardo Ros , Niceto R Luque

Simple spike synchrony between Purkinje cells projecting to a common neuron in the deep cerebellar nucleus is emerging as an important factor in the encoding of output information from cerebellar cortex. Stochastic synchronization is a…

Neurons and Cognition · Quantitative Biology 2014-08-14 Sergio Verduzco-Flores

Neurons are thought of as the building blocks of excitable brain tissue. However, at the single neuron level, the neuronal membrane, the dendritic arbor and the axonal projections can also be considered an extended active medium. Active…

Neurons and Cognition · Quantitative Biology 2013-11-28 Leonardo L. Gollo , Osame Kinouchi , Mauro Copelli

Learning and memory may rely on the ability of neuronal circuits to reorganize by dendritic spine remodeling. We have looked for geometrical parameters of cortical circuits, which maximize information storage capacity associated with this…

Biological Physics · Physics 2007-05-23 Armen Stepanyants
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