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We present a new use of Answer Set Programming (ASP) to discover the molecular structure of chemical samples based on the relative abundance of elements and structural fragments, as measured in mass spectrometry. To constrain the…

Logic in Computer Science · Computer Science 2026-02-25 Nils Küchenmeister , Alex Ivliev , Markus Krötzsch

While traditional trial-and-error methods for designing amorphous alloys are costly and inefficient, machine learning approaches based solely on composition lack critical atomic structural information. Machine learning interatomic…

Materials Science · Physics 2025-08-19 Xuhe Gong , Hengbo Zhao , Xiao Fu , Jingchen Lian , Qifan Yang , Ran Li , Ruijuan Xiao , Tao Zhang , Hong Li

Up to the present, an enormous number of advanced techniques have been developed to enhance and extract the spatially semantic information in hyperspectral image processing and analysis. However, locally semantic change, such as scene…

Computer Vision and Pattern Recognition · Computer Science 2019-12-20 Danfeng Hong , Xin Wu , Pedram Ghamisi , Jocelyn Chanussot , Naoto Yokoya , Xiao Xiang Zhu

Atom probe tomography (APT) is a 3D analysis technique that offers unique chemical accuracy and sensitivity with sub-nanometer spatial resolution. Recently, there is an increasing interest in the application of APT to complex oxides…

The automation of ab initio simulations is essential in view of performing high-throughput (HT) computational screenings oriented to the discovery of novel materials with desired physical properties. In this work, we propose algorithms and…

Machine learning interatomic potentials (MLIPs) have massively changed the field of atomistic modeling. They enable the accuracy of density functional theory in large-scale simulations while being nearly as fast as classical interatomic…

Materials Science · Physics 2025-12-03 Niklas Leimeroth , Linus C. Erhard , Karsten Albe , Jochen Rohrer

The success of first principles electronic structure calculation for predictive modeling in chemistry, solid state physics, and materials science is constrained by the limitations on simulated length and time scales due to computational…

Materials Science · Physics 2018-12-19 Albert P. Bartok , James Kermode , Noam Bernstein , Gabor Csanyi

Understanding object affordances is essential for enabling robots to perform purposeful and fine-grained interactions in diverse and unstructured environments. However, existing approaches either rely on retrieval, which is fragile due to…

Robotics · Computer Science 2026-04-01 Qiyuan Zhuang , He-Yang Xu , Yijun Wang , Xin-Yang Zhao , Yang-Yang Li , Xiu-Shen Wei

Deep neural networks have gained great success due to the increasing amounts of data, and diverse effective neural network designs. However, it also brings a heavy computing burden as the amount of training data is proportional to the…

Machine Learning · Computer Science 2023-10-19 Peng Yao , Chao Liao , Jiyuan Jia , Jianchao Tan , Bin Chen , Chengru Song , Di Zhang

Atomic fingerprints are commonly used for the characterization of local environments of atoms in machine learning and other contexts. In this work, we study the behavior of two widely used fingerprints, namely the smooth overlap of atomic…

Other Condensed Matter · Physics 2022-02-02 Behnam Parsaeifard , Stefan Goedecker

Machine learning interatomic potentials (MLIPs) have been widely used to facilitate large-scale molecular simulations with accuracy comparable to ab initio methods. In practice, MLIP-based molecular simulations often encounter the issue of…

Computational Physics · Physics 2025-04-17 Han Xu , Taoyong Cui , Chenyu Tang , Jinzhe Ma , Dongzhan Zhou , Yuqiang Li , Xiang Gao , Xingao Gong , Wanli Ouyang , Shufei Zhang , Mao Su

A common architectural choice for deep metric learning is a convolutional neural network followed by global average pooling (GAP). Albeit simple, GAP is a highly effective way to aggregate information. One possible explanation for the…

Computer Vision and Pattern Recognition · Computer Science 2023-08-23 Yeti Z. Gurbuz , Ozan Sener , A. Aydın Alatan

Graph Neural Networks (GNN) have been shown to work effectively for modeling graph structured data to solve tasks such as node classification, link prediction and graph classification. There has been some recent progress in defining the…

Machine Learning · Computer Science 2020-02-04 Ekagra Ranjan , Soumya Sanyal , Partha Pratim Talukdar

Copolymers are highly versatile materials with a vast range of possible chemical compositions. By using computational methods for property prediction, the design of copolymers can be accelerated, allowing for the prioritization of…

Materials Science · Physics 2025-09-16 Elaheh Kazemi-Khasragh , Rocío Mercado , Carlos Gonzalez , Maciej Haranczyk

Machine learning interatomic potentials (MLIPs) are routinely used to model diverse atomistic phenomena, yet parameterizing them to accurately capture solid-state phase transformations remains difficult. We present error metrics and…

Materials Science · Physics 2026-01-21 Lorenzo Piersante , Anirudh Raju Natarajan

This chapter discusses the importance of incorporating three-dimensional symmetries in the context of statistical learning models geared towards the interpolation of the tensorial properties of atomic-scale structures. We focus on Gaussian…

Chemical Physics · Physics 2019-04-04 Andrea Grisafi , David M. Wilkins , Michael J. Willatt , Michele Ceriotti

We introduce the notion of point affiliation into feature upsampling. By abstracting a feature map into non-overlapped semantic clusters formed by points of identical semantic meaning, feature upsampling can be viewed as point affiliation…

Computer Vision and Pattern Recognition · Computer Science 2023-07-18 Wenze Liu , Hao Lu , Yuliang Liu , Zhiguo Cao

Understanding the structure and thermodynamics of solvated ions is essential for advancing applications in electrochemistry, water treatment, and energy storage. While ab initio molecular dynamics methods are highly accurate, they are…

Chemical Physics · Physics 2025-07-15 Ademola Soyemi , Tibor Szilvasi

The current capacity of computers makes it possible to perform simulations of small systems with portable, explicit-solvent potentials achieving high degree of accuracy. However, simplified models must be employed to exploit the behaviour…

Biomolecules · Quantitative Biology 2015-06-18 R. Capelli , C. Paissoni , P. Sormanni , G. Tiana

In this work we apply methods for describing 3D images to the problem of encoding atomic environments in a way that is invariant to rotations, translations, and permutations of the atoms and, crucially, can be decoded back into the original…

Materials Science · Physics 2021-10-28 Martin Uhrin