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We advance the state of the art in biomolecular interaction extraction with three contributions: (i) We show that deep, Abstract Meaning Representations (AMR) significantly improve the accuracy of a biomolecular interaction extraction…

Computation and Language · Computer Science 2015-12-08 Sahil Garg , Aram Galstyan , Ulf Hermjakob , Daniel Marcu

In this paper, we propose a fresh perspective on argumentation semantics, to view them as a relational database. It offers encapsulation of the underlying argumentation graph, and allows us to understand argumentation semantics under a…

Artificial Intelligence · Computer Science 2021-04-27 Ryuta Arisaka , Takayuki Ito

Nowadays, the interpretability of machine learning models is becoming increasingly important, especially in the medical domain. Aiming to shed some light on how to rationalize medical relation prediction, we present a new interpretable…

Computation and Language · Computer Science 2020-05-05 Zhen Wang , Jennifer Lee , Simon Lin , Huan Sun

We address the task of explaining relationships between two scientific documents using natural language text. This task requires modeling the complex content of long technical documents, deducing a relationship between these documents, and…

Computation and Language · Computer Science 2021-08-16 Kelvin Luu , Xinyi Wu , Rik Koncel-Kedziorski , Kyle Lo , Isabel Cachola , Noah A. Smith

Medical language processing and deep learning techniques have emerged as critical tools for improving healthcare, particularly in the analysis of medical imaging and medical text data. These multimodal data fusion techniques help to improve…

Computation and Language · Computer Science 2025-04-28 Sayeh Gholipour Picha , Dawood Al Chanti , Alice Caplier

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Tables on the Web contain a vast amount of knowledge in a structured form. To tap into this valuable resource, we address the problem of table retrieval: answering an information need with a ranked list of tables. We investigate this…

Information Retrieval · Computer Science 2021-05-14 Shuo Zhang , Krisztian Balog

Real applications of natural language document processing are very often confronted with domain specific lexical gaps during the analysis of documents of a new domain. This paper describes an approach for the derivation of domain specific…

Artificial Intelligence · Computer Science 2007-05-23 Manuela Kunze , Dietmar Roesner

In this work several semantic approaches to concept-based query expansion and reranking schemes are studied and compared with different ontology-based expansion methods in web document search and retrieval. In particular, we focus on…

Information Retrieval · Computer Science 2017-01-20 Valentina Franzoni , Yuanxi Li , Clement H. C. Leung , Alfredo Milani

Traditional information retrieval systems rely on keywords to index documents and queries. In such systems, documents are retrieved based on the number of shared keywords with the query. This lexical-focused retrieval leads to inaccurate…

Information Retrieval · Computer Science 2013-03-08 Fatiha Boubekeur , Wassila Azzoug

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Research in the Life Sciences depends on the integration of large, distributed and heterogeneous data sources and web services. The discovery of which of these resources are the most appropriate to solve a given task is a complex research…

Artificial Intelligence · Computer Science 2010-12-09 Maria Perez , Rafael Berlanga , Ismael Sanz

The study of causal relationships between emotions and causes in texts has recently received much attention. Most works focus on extracting causally related clauses from documents. However, none of these works has considered that the causal…

Computation and Language · Computer Science 2023-11-29 Xinhong Chen , Zongxi Li , Yaowei Wang , Haoran Xie , Jianping Wang , Qing Li

In the context of requirements engineering, relation extraction involves identifying and documenting the associations between different requirements artefacts. When dealing with textual requirements (i.e., requirements expressed using…

Software Engineering · Computer Science 2025-03-21 Quim Motger , Xavier Franch

Automatic extraction of cause-effect relationships from natural language texts is a challenging open problem in Artificial Intelligence. Most of the early attempts at its solution used manually constructed linguistic and syntactic rules on…

Artificial Intelligence · Computer Science 2016-05-26 Nabiha Asghar

Document-level relation extraction (DocRE) is a task that focuses on identifying relations between entities within a document. However, existing DocRE models often overlook the correlation between relations and lack a quantitative analysis…

Information Retrieval · Computer Science 2023-10-23 Yusheng Huang , Zhouhan Lin

When searching the web, it is often possible that there are too many results available for ambiguous queries. Text snippets, extracted from the retrieved pages, are an indicator of the pages' usefulness to the query intention and can be…

Information Retrieval · Computer Science 2009-03-24 N. Zotos , P. Tzekou , G. Tsatsaronis , L. Kozanidis , S. Stamou , I. Varlamis

Tables are common and important in scientific documents, yet most text-based document search systems do not capture structures and semantics specific to tables. How to bridge different types of mismatch between keywords queries and…

Information Retrieval · Computer Science 2017-07-13 Kyle Yingkai Gao , Jamie Callan

We introduce a novel graph-based framework for alleviating key challenges in distantly-supervised relation extraction and demonstrate its effectiveness in the challenging and important domain of biomedical data. Specifically, we propose a…

Machine Learning · Computer Science 2024-04-08 Hao Zhang , Yang Liu , Xiaoyan Liu , Tianming Liang , Gaurav Sharma , Liang Xue , Maozu Guo

As a research community grows, more and more papers are published each year. As a result there is increasing demand for improved methods for finding relevant papers, automatically understanding the key ideas and recommending potential…

Information Retrieval · Computer Science 2019-01-03 Yi Luan
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