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Optical microscopy is an indispensable tool in life sciences research, but conventional techniques require compromises between imaging parameters like speed, resolution, field-of-view, and phototoxicity. To overcome these limitations,…

Quantitative Methods · Quantitative Biology 2024-04-01 Leonor Morgado , Estibaliz Gómez-de-Mariscal , Hannah S. Heil , Ricardo Henriques

Agentic AI is rapidly advancing in healthcare and biomedical research. However, in medical image analysis, their performance and adoption remain limited due to the lack of a robust ecosystem, insufficient toolsets, and the absence of…

Computer Vision and Pattern Recognition · Computer Science 2025-09-25 Songhao Li , Jonathan Xu , Tiancheng Bao , Yuxuan Liu , Yuchen Liu , Yihang Liu , Lilin Wang , Wenhui Lei , Sheng Wang , Yinuo Xu , Yan Cui , Jialu Yao , Shunsuke Koga , Zhi Huang

The increasing availability of high-quality optical and near-infrared spectroscopic data, as well as advances in modelling techniques, have greatly expanded the scientific potential of spectroscopic studies. However, the software tools…

Instrumentation and Methods for Astrophysics · Physics 2025-12-23 Daniele Gasparri , Lorenzo Morelli , Umberto Battino , Jairo Méndez Abreu , Adriana de Lorenzo-Cáceres

HEALPix by G\'orski et. al. (2005) is de-facto standard for Cosmic Microwave Background (CMB) data storage and analysis, and is widely used in current and upcoming CMB experiments. Almost all the datasets in Legacy Archive for Microwave…

Instrumentation and Methods for Astrophysics · Physics 2023-09-26 Andrei V. Frolov

Graphical user interface testing is significantly challenging, and automating it even more so. Test-driven development is impractical: it generally requires an initial implementation of the GUI to generate golden images or to construct…

Software Engineering · Computer Science 2020-06-09 Donald Beaver

The quest for deeper understanding of biological systems has driven the acquisition of increasingly larger multidimensional image datasets. Inspecting and manipulating data of this complexity is very challenging in traditional visualization…

Graphics · Computer Science 2018-08-23 Stanislav Pidhorskyi , Michael Morehead , Quinn Jones , George Spirou , Gianfranco Doretto

Graphical User Interface (GUI) agents have the potential to assist users in interacting with complex software (e.g., PowerPoint, Photoshop). While prior research has primarily focused on automating user actions through clicks and…

Computer Vision and Pattern Recognition · Computer Science 2026-03-30 Saelyne Yang , Jaesang Yu , Yi-Hao Peng , Kevin Qinghong Lin , Jae Won Cho , Yale Song , Juho Kim

Visual Molecular Dynamics (VMD) is one of the most widely used molecular graphics software in the community of theoretical simulations. So far, however, it still lacks a graphical user interface (GUI) for molecular manipulations when doing…

Biomolecules · Quantitative Biology 2020-07-03 ChenChen Wu , Shengtang Liu , Shitong Zhang , Zaixing Yang

Purpose: As interest in CEST-MRI grows, particularly in the preclinical setting, the necessity for standardized and easy-to-use acquisition and data analysis pipelines has become apparent. While vendors have increasingly introduced support…

Advances in large language models (LLMs) and real-time speech recognition now make it possible to issue any graphical user interface (GUI) action through natural language and receive the corresponding system response directly through the…

Human-Computer Interaction · Computer Science 2025-10-10 Hans G. W. van Dam

Automation of existing Graphical User Interfaces (GUIs) is important but hard to achieve. Upstream of making the GUI user-accessible or somehow scriptable, even the data-collection to understand the original interface poses significant…

Human-Computer Interaction · Computer Science 2025-04-15 Iason Chaimalas , Arnas Vyšniauskas , Gabriel Brostow

The true costs of high performance computing are currently dominated by software. Addressing these costs requires shifting to high productivity languages such as Matlab. MatlabMPI is a Matlab implementation of the Message Passing Interface…

Astrophysics · Physics 2007-05-23 Jeremy Kepner , Stan Ahalt

Oblique plane microscopy, OPM, is a form of lightsheet microscopy that permits volumetric imaging of biological samples at high temporal and spatial resolution. However, the imaging geometry of OPM, and related variants of light sheet…

Image and Video Processing · Electrical Eng. & Systems 2022-11-03 Jacob R. Lamb , Edward N. Ward , Clemens F. Kaminski

Background and Objective: Computational ultrasound imaging has become a well-established methodology in the ultrasound community. Simulations of ultrasound sequences and images allow the study of innovative techniques in terms of emission…

Medical Physics · Physics 2022-03-08 Damien Garcia

The growing popularity and widespread adoption of large language models (LLMs) necessitates the development of tools that enhance the effectiveness of user interactions with these models. Understanding the structures and functions of these…

Human-Computer Interaction · Computer Science 2025-03-03 Divya Perumal , Swaroop Panda

One important step in software development is testing the finished product with actual users. These tests aim, among other goals, at determining unintuitive behavior of the software as it is presented to the end-user. Moreover, they aim to…

Software Engineering · Computer Science 2025-05-26 Tim Rosenbach , David Heidrich , Alexander Weinert

We present AutoGLM, a new series in the ChatGLM family, designed to serve as foundation agents for autonomous control of digital devices through Graphical User Interfaces (GUIs). While foundation models excel at acquiring human knowledge,…

The true costs of high performance computing are currently dominated by software. Addressing these costs requires shifting to high productivity languages such as Matlab. MatlabMPI is a Matlab implementation of the Message Passing Interface…

Astrophysics · Physics 2015-05-26 Jeremy Kepner , Stan Ahalt

It is common practice for developers of user-facing software to transform a mock-up of a graphical user interface (GUI) into code. This process takes place both at an application's inception and in an evolutionary context as GUI changes…

Software Engineering · Computer Science 2018-07-30 Kevin Moran , Carlos Bernal-Cárdenas , Michael Curcio , Richard Bonett , Denys Poshyvanyk

Understanding puffing topography (PT), which includes puff duration, intra-puff interval, and puff count per session, is critical for evaluating Electronic Nicotine Delivery Systems (ENDS) use, toxicant exposure, and informing regulatory…

Software Engineering · Computer Science 2026-04-29 Shehan Irteza Pranto , Brett Fassler , Md Rafi Islam , Ashley Schenkel , Larry W. Hawk , Edward Sazonov