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This chapter explores dynamical structural equation models (DSEMs) and their nonlinear generalizations into sheaves of dynamical systems. It demonstrates these two disciplines on part of the food web in the Bering Sea. The translation from…

Algebraic Topology · Mathematics 2025-11-07 Michael Robinson , Michael L. Szulczewski , James T. Thorson

The analysis of complex dynamic systems is a core research topic in formal methods and AI, and combined modelling of systems with data has gained increasing importance in applications such as business process management. In addition,…

Logic in Computer Science · Computer Science 2022-05-19 Paolo Felli , Marco Montali , Sarah Winkler

This thesis presents the theoretical, conceptual and methodological aspects that support the modeling of dynamical systems (DS) by using several agents. The modeling approach permits the assessment of properties representing order, change,…

Multiagent Systems · Computer Science 2016-06-03 Nelson Fernandez

Dynamical systems see widespread use in natural sciences like physics, biology, chemistry, as well as engineering disciplines such as circuit analysis, computational fluid dynamics, and control. For simple systems, the differential…

Stochastic hybrid systems have received significant attentions as a relevant modelling framework describing many systems, from engineering to the life sciences: they enable the study of numerous applications, including transportation…

Logic in Computer Science · Computer Science 2022-03-11 Abolfazl Lavaei , Sadegh Soudjani , Alessandro Abate , Majid Zamani

Discrete models have a long tradition in engineering, including finite state machines, Boolean networks, Petri nets, and agent-based models. Of particular importance is the question of how the model structure constrains its dynamics. This…

Molecular Networks · Quantitative Biology 2011-08-02 Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba

Energy systems optimisation models are a leading tool for informing decisions in the energy transition. However, these models often remain opaque, and results are frequently presented without a clear discussion of their epistemic…

Many embedded and real-time systems have a inherent probabilistic behaviour (sensors data, unreliable hardware,...). In that context, it is crucial to evaluate system properties such as "the probability that a particular hardware fails".…

Software Engineering · Computer Science 2015-09-22 Van Chan Ngo , Axel Legay , Jean Quilbeuf

Identifying and understanding modular organizations is centrally important in the study of complex systems. Several approaches to this problem have been advanced, many framed in information-theoretic terms. Our treatment starts from the…

Adaptation and Self-Organizing Systems · Physics 2015-01-19 Artemy Kolchinsky , Luis M. Rocha

We explore probability modelling of discretization uncertainty for system states defined implicitly by ordinary or partial differential equations. Accounting for this uncertainty can avoid posterior under-coverage when likelihoods are…

Methodology · Statistics 2016-10-25 Oksana A. Chkrebtii , David A. Campbell , Ben Calderhead , Mark A. Girolami

Discrete-state stochastic models are a popular approach to describe the inherent stochasticity of gene expression in single cells. The analysis of such models is hindered by the fact that the underlying discrete state space is extremely…

Analysis of PDEs · Mathematics 2021-01-28 Pavel Kurasov , Delio Mugnolo , Verena Wolf

Computation biology helps to understand all processes in organisms from interaction of molecules to complex functions of whole organs. Therefore, there is a need for mathematical methods and models that deliver logical explanations in a…

Molecular Networks · Quantitative Biology 2018-10-10 Ines Abdeljaoued-Tej , Alia BenKahla , Ghassen Haddad , Annick Valibouze

We present a verification methodology for analysing the decision-making component in agent-based hybrid systems. Traditionally hybrid automata have been used to both implement and verify such systems, but hybrid automata based modelling,…

Logic in Computer Science · Computer Science 2013-10-10 Louise A. Dennis , Michael Fisher , Nicholas K. Lincoln , Alexei Lisitsa , Sandor M. Veres

Model discovery aims to uncover governing differential equations of dynamical systems directly from experimental data. Benchmarking such methods is essential for tracking progress and understanding trade-offs in the field. While prior…

Machine Learning · Computer Science 2026-01-27 Amirmohammad Ziaei Bideh , Aleksandra Georgievska , Jonathan Gryak

Ensuring that safety-critical applications behave as intended is an important yet challenging task. Modeling languages like differential dynamic logic (dL) have proof calculi capable of proving guarantees for such applications. However, dL…

Formal Languages and Automata Theory · Computer Science 2024-10-08 Myra Dotzel , Stefan Mitsch , André Platzer

Decision-guided perspectives on model uncertainty expand traditional statistical thinking about managing, comparing and combining inferences from sets of models. Bayesian predictive decision synthesis (BPDS) advances conceptual and…

Methodology · Statistics 2023-05-09 Emily Tallman , Mike West

Software is a great enabler for a number of projects that otherwise would be impossible to perform. Such projects include Space Exploration, Weather Modeling, Genome Projects, and many others. It is critical that software aiding these…

Software Engineering · Computer Science 2023-02-10 Aedin Pereira , Julia Ding , Zaina Ali , Rodion Podorozhny

Real world systems of interest often feature interactions between discrete and continuous dynamics. Various hybrid system formalisms have been used to model and analyze this combination of dynamics, ranging from mathematical descriptions,…

Logic in Computer Science · Computer Science 2021-09-22 Yong Kiam Tan , André Platzer

Research of delayed neural networks with variable self-inhibitions, inter-connection weights, and inputs is an important issue. %In the real world, self-inhibitions, %inter-connection weights, and inputs should vary through time. In In this…

Dynamical Systems · Mathematics 2007-05-23 Wenlian Lu , Tianping Chen

Discovering nonlinear differential equations that describe system dynamics from empirical data is a fundamental challenge in contemporary science. Here, we propose a methodology to identify dynamical laws by integrating denoising techniques…

Machine Learning · Computer Science 2023-05-04 Kevin Egan , Weizhen Li , Rui Carvalho