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In this article, we present $\textbf{ldmppr}$, an R package for estimating, evaluating, simulating from, and visualizing location-dependent marked spatial point processes. To date, it has commonly been assumed that the marks associated with…

Computation · Statistics 2026-05-20 Lane Drew , Andee Kaplan

Linear discriminant analysis (LDA) is a powerful tool in building classifiers with easy computation and interpretation. Recent advancements in science technology have led to the popularity of datasets with high dimensions, high orders and…

Computation · Statistics 2019-04-09 Yuqing Pan , Qing Mai , Xin Zhang

We propose a tree ensemble method, referred to as time series forest (TSF), for time series classification. TSF employs a combination of the entropy gain and a distance measure, referred to as the Entrance (entropy and distance) gain, for…

Machine Learning · Computer Science 2013-06-04 Houtao Deng , George Runger , Eugene Tuv , Martyanov Vladimir

In \textit{computer-based testing} it has become standard to collect response accuracy (RA) and response times (RTs) for each test item. IRT models are used to measure a latent variable (e.g., ability, intelligence) using the RA…

Methodology · Statistics 2021-06-21 Jean-Paul Fox , Konrad Klotzke , Ahmet Salih Simsek

Large-scale proteomic analysis is emerging as a powerful technique in biology and relies heavily on data acquired by state-of-the-art mass spectrometers. As with any other field in Systems Biology, computational tools are required to deal…

Quantitative Methods · Quantitative Biology 2011-05-02 Fahad Saeed , Trairak Pisitkun , Mark A. Knepper , Jason D. Hoffert

Qhronology is a novel scientific-computing package for studying quantum models of closed timelike curves (CTCs) and simulating general quantum information processing and computation. Written in Python, the program provides a comprehensive…

Quantum Physics · Physics 2026-04-15 Lachlan G. Bishop

Motion planning is a critical component in any robotic system. Over the years, powerful tools like the Open Motion Planning Library (OMPL) have been developed, offering numerous motion planning algorithms. However, existing frameworks often…

Robotics · Computer Science 2025-10-01 Itamar Mishani , Yorai Shaoul , Ramkumar Natarajan , Jiaoyang Li , Maxim Likhachev

The explosion of Time Series (TS) data, driven by advancements in technology, necessitates sophisticated analytical methods. Modern management systems increasingly rely on analyzing this data, highlighting the importance of effcient…

Machine Learning · Computer Science 2025-03-27 Seyedeh Azadeh Fallah Mortezanejad , Ruochen Wang

Instance Space Analysis is a methodology to evaluate algorithm performance across diverse problem fields. Through visualisation and exploratory data analysis techniques, Instance Space Analysis offers objective, data-driven insights into…

The Stochastic Block Model (SBM) is a popular probabilistic model for random graphs. It is commonly used for clustering network data by aggregating nodes that share similar connectivity patterns into blocks. When fitting an SBM to a network…

Computation · Statistics 2021-05-28 Pierre Barbillon , Julien Chiquet , Timothée Tabouy

This article introduces the R package csranks for estimation and inference involving ranks. First, we review methods for the construction of confidence sets for ranks, namely marginal and simultaneous confidence sets as well as confidence…

Econometrics · Economics 2024-01-30 Denis Chetverikov , Magne Mogstad , Pawel Morgen , Joseph Romano , Azeem Shaikh , Daniel Wilhelm

This paper describes a package for calculations of expressions with Dirac matrixes. Advantages to existing similar packages are described. MatrixExp package is intended for simplification of complex expressions involving $\gamma$-matrixes,…

High Energy Physics - Phenomenology · Physics 2009-11-11 V. A. Poghosyan

Solvang and Planque (2020) provided a trend estimation and classification (TREC) approach to estimating dominant common trends among multivariate time series observations. This approach was developed to improve communication among…

Applications · Statistics 2022-09-15 Hiroko Solvang , Mineaki Ohishi

We present MRPC, an R package that learns causal graphs with improved accuracy over existing packages, such as pcalg and bnlearn. Our algorithm builds on the powerful PC algorithm, the canonical algorithm in computer science for learning…

Machine Learning · Statistics 2018-06-07 Md. Bahadur Badsha , Evan A Martin , Audrey Qiuyan Fu

This paper introduces the R package sgmcmc; which can be used for Bayesian inference on problems with large datasets using stochastic gradient Markov chain Monte Carlo (SGMCMC). Traditional Markov chain Monte Carlo (MCMC) methods, such as…

Computation · Statistics 2018-04-16 Jack Baker , Paul Fearnhead , Emily B. Fox , Christopher Nemeth

This system paper presents the Topology ToolKit (TTK), a software platform designed for topological data analysis in scientific visualization. TTK provides a unified, generic, efficient, and robust implementation of key algorithms for the…

Graphics · Computer Science 2019-07-18 Julien Tierny , Guillaume Favelier , Joshua A. Levine , Charles Gueunet , Michael Michaux

Symbolic representations of time series have proven to be effective for time series classification, with many recent approaches including SAX-VSM, BOSS, WEASEL, and MrSEQL. The key idea is to transform numerical time series to symbolic…

Machine Learning · Computer Science 2022-03-16 Thach Le Nguyen , Georgiana Ifrim

Summary: ipd is an open-source R software package for the downstream modeling of an outcome and its associated features where a potentially sizable portion of the outcome data has been imputed by an artificial intelligence or machine…

Continuous-time event sequences play a vital role in real-world domains such as healthcare, finance, online shopping, social networks, and so on. To model such data, temporal point processes (TPPs) have emerged as the most natural and…

In the evolving landscape of neural network models, one prominent challenge stand out: the significant memory overheads associated with training expansive models. Addressing this challenge, this study delves deep into the Rotated Tensor…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-06 Cheng Luo , Tianle Zhong , Geoffrey Fox