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Levenshtein distance is a commonly used edit distance metric, typically applied in language processing, and to a lesser extent, in molecular biology analysis. Biological nucleic acid sequences are often embedded in longer sequences and are…

Quantitative Methods · Quantitative Biology 2023-10-20 Robert Logan , Amy W. Wehe , Dori C. Woods , Jon Tilly , Konstantin Khrapko

String edit distances have been used for decades in applications ranging from spelling correction and web search suggestions to DNA analysis. Most string edit distances are variations of the Levenshtein distance and consider only…

Genomics · Quantitative Biology 2022-05-12 Taylor Petty , Jan Hannig , Tunde I Huszar , Hari Iyer

The edit distance (a.k.a. the Levenshtein distance) between two strings is defined as the minimum number of insertions, deletions or substitutions of symbols needed to transform one string into another. The problem of computing the edit…

Computational Complexity · Computer Science 2017-08-17 Arturs Backurs , Piotr Indyk

The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…

Neural and Evolutionary Computing · Computer Science 2013-12-09 Muhammad Marwan Muhammad Fuad

Edit distance is a measurement of similarity between two sequences such as strings, point sequences, or polygonal curves. Many matching problems from a variety of areas, such as signal analysis, bioinformatics, etc., need to be solved in a…

Computational Geometry · Computer Science 2020-09-10 Kyle Fox , Xinyi Li

This research project aimed to overcome the challenge of analysing human language relationships, facilitate the grouping of languages and formation of genealogical relationship between them by developing automated comparison techniques.…

Computation and Language · Computer Science 2020-02-03 Gabija Mikulyte , David Gilbert

In many applications, it is necessary to determine the similarity of two strings. A widely-used notion of string similarity is the edit distance: the minimum number of insertions, deletions, and substitutions required to transform one…

cmp-lg · Computer Science 2008-02-03 Eric Sven Ristad , Peter N. Yianilos

Text similarity calculation is a fundamental problem in natural language processing and related fields. In recent years, deep neural networks have been developed to perform the task and high performances have been achieved. The neural…

Computation and Language · Computer Science 2018-10-26 Yilin Niu , Chao Qiao , Hang Li , Minlie Huang

The edit distance is a fundamental measure of sequence similarity, defined as the minimum number of character insertions, deletions, and substitutions needed to transform one string into the other. Given two strings of length at most $n$,…

Data Structures and Algorithms · Computer Science 2023-07-17 Tomasz Kociumaka , Anish Mukherjee , Barna Saha

This paper revisits recent code similarity evaluation metrics, particularly focusing on the application of Abstract Syntax Tree (AST) editing distance in diverse programming languages. In particular, we explore the usefulness of these…

Computation and Language · Computer Science 2025-06-06 Yewei Song , Cedric Lothritz , Daniel Tang , Tegawendé F. Bissyandé , Jacques Klein

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

Data Structures and Algorithms · Computer Science 2015-05-22 Julien Lerouge , Zeina Abu-Aisheh , Romain Raveaux , Pierre Héroux , Sébastien Adam

In this paper, we present a novel error measure to compare a segmentation against ground truth. This measure, which we call Tolerant Edit Distance (TED), is motivated by two observations: (1) Some errors, like small boundary shifts, are…

Computer Vision and Pattern Recognition · Computer Science 2016-02-02 Jan Funke , Francesc Moreno-Noguer , Albert Cardona , Matthew Cook

Edit-distance-based string similarity search has many applications such as spell correction, data de-duplication, and sequence alignment. However, computing edit distance is known to have high complexity, which makes string similarity…

Databases · Computer Science 2020-05-25 Xinyan Dai , Xiao Yan , Kaiwen Zhou , Yuxuan Wang , Han Yang , James Cheng

The Levenshtein distance is an important tool for the comparison of symbolic sequences, with many appearances in genome research, linguistics and other areas. For efficient applications, an approximation by a distance of smaller…

Quantitative Methods · Quantitative Biology 2007-05-23 Michael Baake , Uwe Grimm , Robert Giegerich

The tutorial describes the concept of edit distances applied to research and commercial contexts. We use Translation Edit Rate (TER), Levenshtein, Damerau-Levenshtein, Longest Common Subsequence and $n$-gram distances to demonstrate the…

Computation and Language · Computer Science 2024-10-10 Félix do Carmo , Diptesh Kanojia

This paper presents a novel approach to calculating the Levenshtein (edit) distance within the framework of Fully Homomorphic Encryption (FHE), specifically targeting third-generation schemes like TFHE. Edit distance computations are…

Cryptography and Security · Computer Science 2025-08-21 Wouter Legiest , Jan-Pieter D'Anvers , Bojan Spasic , Nam-Luc Tran , Ingrid Verbauwhede

We present novel randomized approximation schemes for the Edit Distance (ED) problem and the Longest Common Subsequence (LCS) problem that, for any constant $\epsilon>0$, compute a $(1+\epsilon)$-approximation for ED and a…

Data Structures and Algorithms · Computer Science 2026-04-01 Xiao Mao , Aviad Rubinstein

The graph edit distance (GED) is a well-established distance measure widely used in many applications. However, existing methods for the GED computation suffer from several drawbacks including oversized search space, huge memory…

Data Structures and Algorithms · Computer Science 2017-10-02 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

In a way similar to the string-to-string correction problem we address time series similarity in the light of a time-series-to-time-series-correction problem for which the similarity between two time series is measured as the minimum cost…

Information Retrieval · Computer Science 2008-12-28 Pierre-François Marteau

Assessing the extent of human edits on texts generated by Large Language Models (LLMs) is crucial to understanding the human-AI interactions and improving the quality of automated text generation systems. Existing edit distance metrics,…

Computation and Language · Computer Science 2024-12-24 Nicolas Devatine , Louis Abraham
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