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Mixing arithmetic and boolean circuits to perform privacy-preserving machine learning has become increasingly popular. Towards this, we propose a framework for the case of four parties with at most one active corruption called Tetrad.…

Cryptography and Security · Computer Science 2022-02-17 Nishat Koti , Arpita Patra , Rahul Rachuri , Ajith Suresh

While there is a general focus on predictions of values, mathematically more appropriate is prediction of probability distributions: with additional possibilities like prediction of uncertainty, higher moments and quantiles. For the purpose…

Biomolecules · Quantitative Biology 2022-07-25 Jarek Duda , Sabina Podlewska

Tumors bearing Ras mutations are notoriously difficult to treat. Drug combinations targeting the Ras protein or its pathway have also not met with success. Pathway drug cocktails, which are combinations aiming at parallel pathways, appear…

Molecular Networks · Quantitative Biology 2013-08-16 Ruth Nussinov , Chung-Jung Tsai , Carla Mattos

Clinical trials (CTs) often fail due to inadequate patient recruitment. This paper tackles the challenges of CT retrieval by presenting an approach that addresses the patient-to-trials paradigm. Our approach involves two key components in a…

Information Retrieval · Computer Science 2023-07-04 Wojciech Kusa , Óscar E. Mendoza , Petr Knoth , Gabriella Pasi , Allan Hanbury

Target search problems are central to a wide range of fields, from biological foraging to the optimization algorithms. Recently, the ability to reset the search has been shown to significantly improve the searcher's efficiency. However, the…

Statistical Mechanics · Physics 2025-03-17 Gorka Muñoz-Gil , Hans J. Briegel , Michele Caraglio

Control theory has seen recently impactful applications in network science, especially in connections with applications in network medicine. A key topic of research is that of finding minimal external interventions that offer control over…

Molecular Networks · Quantitative Biology 2020-07-10 Victor-Bogdan Popescu , Krishna Kanhaiya , Iulian Năstac , Eugen Czeizler , Ion Petre

Recent years have seen more and more demand for a unified framework to address multiple realistic image retrieval tasks concerning both category and attributes. Considering the scale of modern datasets, hashing is favorable for its low…

Computer Vision and Pattern Recognition · Computer Science 2016-07-20 Haomiao Liu , Ruiping Wang , Shiguang Shan , Xilin Chen

The \textit{de facto} paradigm for applying dense retrieval (DR) to new tasks involves fine-tuning a pre-trained model for a specific task. However, this paradigm has two significant limitations: (1) It is difficult adapt the DR to a new…

Information Retrieval · Computer Science 2026-02-27 Zhan Su , Fengran Mo , Jinghan Zhang , Yuchen Hui , Jia Ao Sun , Bingbing Wen , Jian-Yun Nie

In computer-aided drug discovery (CADD), virtual screening (VS) is used for identifying the drug candidates that are most likely to bind to a molecular target in a large library of compounds. Most VS methods to date have focused on using…

Machine Learning · Computer Science 2022-11-09 Andac Demir , Baris Coskunuzer , Ignacio Segovia-Dominguez , Yuzhou Chen , Yulia Gel , Bulent Kiziltan

This is the first year of the TREC Product search track. The focus this year was the creation of a reusable collection and evaluation of the impact of the use of metadata and multi-modal data on retrieval accuracy. This year we leverage the…

Information Retrieval · Computer Science 2023-11-16 Daniel Campos , Surya Kallumadi , Corby Rosset , Cheng Xiang Zhai , Alessandro Magnani

Computational drug repositioning technology is an effective tool to accelerate drug development. Although this technique has been widely used and successful in recent decades, many existing models still suffer from multiple drawbacks such…

Machine Learning · Computer Science 2022-06-01 Xinxing Yang , Genke Yang , Jian Chu

Computer-aided drug discovery is an essential component of modern drug development. Therein, deep learning has become an important tool for rapid screening of billions of molecules in silico for potential hits containing desired chemical…

Randomized experiments are considered the gold standard for estimating causal effects. However, out of the set of possible randomized assignments, some may be likely to produce poor effect estimates and misleading conclusions. Restricted…

Methodology · Statistics 2025-08-28 Maggie Wang , René F. Kizilcec , Michael Baiocchi

Composed Image Retrieval (CIR) aims to retrieve a target image based on a query composed of a reference image, and a relative caption that specifies the desired modification. Despite the rapid development of CIR models, their performance is…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Yikun Liu , Jiangchao Yao , Weidi Xie , Yanfeng Wang

Cross-modal text-molecule retrieval model aims to learn a shared feature space of the text and molecule modalities for accurate similarity calculation, which facilitates the rapid screening of molecules with specific properties and…

Information Retrieval · Computer Science 2024-11-01 Jia Song , Wanru Zhuang , Yujie Lin , Liang Zhang , Chunyan Li , Jinsong Su , Song He , Xiaochen Bo

We present Model Predictive Trees (MPT), a receding horizon tree search algorithm that improves its performance by reusing information efficiently. Whereas existing solvers reuse only the highest-quality trajectory from the previous…

Robotics · Computer Science 2024-11-26 John Lathrop , Benjamin Rivi`ere , Jedidiah Alindogan , Soon-Jo Chung

Traditional multimodal retrieval systems rely primarily on bi-encoder architectures, where performance is closely tied to embedding dimensionality. Recent work, Think-Then-Embed (TTE), shows that incorporating multimodal reasoning to elicit…

We consider a formal statistical design that allows simultaneous enrollment of a main cohort and a backfill cohort of patients in a dose-finding trial. The goal is to accumulate more information at various doses to facilitate dose…

Applications · Statistics 2024-04-03 Jiaxin Liu , Shijie Yuan , B. Nebiyou Bekele , Yuan Ji

There remains an urgent need to identify existing drugs that might be suitable for treating patients suffering from COVID-19 infection. Drugs rarely act at a single molecular target, with off target effects often being responsible for…

Biomolecules · Quantitative Biology 2020-09-03 Sakshi Piplani , Puneet Singh , Nikolai Petrovsky , David A. Winkler

Molecular docking is a central method in the computer-based screening of compound libraries as a part of the rational approach to drug design. Although the method has proved its competence in predicting binding modes correctly, its inherent…

Biomolecules · Quantitative Biology 2014-04-01 Eva Kiszka