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It has recently been discovered that many biological systems, when represented as graphs, exhibit a scale-free topology. One such system is the set of structural relationships among protein domains. The scale-free nature of this and other…

Populations and Evolution · Quantitative Biology 2009-11-10 Eric J. Deeds , Eugene I. Shakhnovich

Scale-free networks with moderate edge dependence experience a phase transition between ultrasmall and small world behaviour when the power law exponent passes the critical value of three. Moreover, there are laws of large numbers for the…

Probability · Mathematics 2017-05-05 Steffen Dereich , Christian Mönch , Peter Mörters

In this paper, a statistical analysis of the structure of one blog community, a kind of social networks, is presented. The quantities such as degree distribution, clustering coefficient, average shortest path length are calculated to…

Statistics Theory · Mathematics 2007-06-13 Feng Fu , Lianghuan Liu , Kai Yang , Long Wang

Many biological networks have been labelled scale-free as their degree distribution can be approximately described by a powerlaw distribution. While the degree distribution does not summarize all aspects of a network it has often been…

Molecular Networks · Quantitative Biology 2007-05-23 M. P. H. Stumpf , P. J. Ingram , I. Nouvel , C. Wiuf

Complex natural and technological systems can be considered, on a coarse-grained level, as assemblies of elementary components: for example, genomes as sets of genes, or texts as sets of words. On one hand, the joint occurrence of…

In their recent work "Scale-free networks are rare", Broido and Clauset address the problem of the analysis of degree distributions in networks to classify them as scale-free at different strengths of "scale-freeness." Over the last two…

Physics and Society · Physics 2020-04-01 Pim van der Hoorn , Ivan Voitalov , Remco van der Hofstad , Dmitri Krioukov

Two power series models are proposed to represent self-similarity and they are compared to the Zipf and Benford distributions. Since evolution of a social network is associated with replicating self-similarity at many levels, the nature of…

Social and Information Networks · Computer Science 2015-06-25 Subhash Kak

We investigate Bak-Sneppen coevolution models on scale-free networks with various degree exponents $\gamma$ including random networks. For $\gamma >3$, the critical fitness value $f_c$ approaches to a nonzero finite value in the limit $N…

Statistical Mechanics · Physics 2009-11-11 Sungmin Lee , Yup Kim

Two large, open source software systems are analyzed from the vantage point of complex adaptive systems theory. For both systems, the full dependency graphs are constructed and their properties are shown to be consistent with the assumption…

Adaptation and Self-Organizing Systems · Physics 2010-01-19 G. A. Kohring

We show how scale-free degree distributions can emerge naturally from growing networks by using random walks for selecting vertices for attachment. This result holds for several variants of the walk algorithm and for a wide range of…

Statistical Mechanics · Physics 2007-05-23 T. S. Evans , J. P. Saramaki

The formation of sentences is a highly structured and history-dependent process. The probability of using a specific word in a sentence strongly depends on the 'history' of word-usage earlier in that sentence. We study a simple…

Physics and Society · Physics 2015-05-28 Stefan Thurner , Rudolf Hanel , Bo Liu , Bernat Corominas-Murtra

Zipf's law is found when the vocabulary of long written texts is ranked according to the frequency of word occurrences, establishing a power-law decay for the frequency vs rank relation. This law is a robust statistical property observed…

Physics and Society · Physics 2020-02-17 Juan Ignacio Perotti , Orlando Vito Billoni

The degree-degree correlation is important in understanding the structural organization of a network and the dynamics upon a network. Such correlation is usually measured by the assortativity coefficient $r$, with natural bounds $r \in…

Physics and Society · Physics 2017-04-26 Dan Yang , Liming Pan , Tao Zhou

In this paper we try to model certain features of human language complexity by means of advanced concepts borrowed from statistical mechanics. We use a time series approach, the diffusion entropy method (DE), to compute the complexity of an…

Statistical Mechanics · Physics 2009-09-03 Paolo Allegrini , Paolo Grigolini , Luigi Palatella

With the number of sequenced genomes now over one hundred, and the availability of rough functional annotations for a substantial proportion of their genes, it has become possible to study the statistics of gene content across genomes. Here…

Biological Physics · Physics 2007-05-23 Erik van Nimwegen

We introduce a non-growth model that generates the power-law distribution with the Zipf exponent. There are N elements, each of which is characterized by a quantity, and at each time step these quantities are redistributed through binary…

Statistical Mechanics · Physics 2012-04-27 Suhan Ree

Contrary to many recent models of growing networks, we present a model with fixed number of nodes and links, where it is introduced a dynamics favoring the formation of links between nodes with degree of connectivity as different as…

Statistical Mechanics · Physics 2007-05-23 M. Baiesi , S. S. Manna

Loops are subgraphs responsible for the multiplicity of paths going from one to another generic node in a given network. In this paper we present an analytic approach for the evaluation of the average number of loops in random scale-free…

Disordered Systems and Neural Networks · Physics 2009-11-11 Ginestra Bianconi , Matteo Marsili

Recurrence networks are a novel tool of nonlinear time series analysis allowing the characterisation of higher-order geometric properties of complex dynamical systems based on recurrences in phase space, which are a fundamental concept in…

Chaotic Dynamics · Physics 2016-04-07 Y. Zou , J. Heitzig , R. V. Donner , J. F. Donges , J. D. Farmer , R. Meucci , S. Euzzor , N. Marwan , J. Kurths

Methods connecting dynamical systems and graph theory have attracted increasing interest in the past few years, with applications ranging from a detailed comparison of different kinds of dynamics to the characterisation of empirical data.…

Statistical Mechanics · Physics 2018-01-18 Marcello A. Budroni , Andrea Baronchelli , Romualdo Pastor-Satorras