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In this paper, we develop and analyze a minimal model for a 2D network of cross-linked actin filaments and myosin motors, representing the cortical cytoskeleton of eukaryotic cells. We implement coarse-grained representations of force…

Subcellular Processes · Quantitative Biology 2016-12-23 William M. McFadden , Patrick M. McCall , Edwin M. Munro

It was discovered recently that frictional granular materials can exhibit an important mechanism for instabilities, i.e the appearance of pairs of complex eigenvalues in their stability matrix. The consequence is an oscillatory exponential…

Soft Condensed Matter · Physics 2019-10-09 Joyjit Chattoraj , Oleg Gendelman , Massimo Pica Ciamarra , Itamar Procaccia

The rotational Brownian motion of colloidal spheres in dense suspensions reflects local hydrodynamics and friction, both key to non-linear rheological phenomena such as shear-thickening and jamming, and transport in crowded environments,…

Soft Condensed Matter · Physics 2021-06-23 Taiki Yanagishima , Yanyan Liu , Hajime Tanaka , Roel Dullens

An active colloidal fluid comprised of self-propelled spinning particles injecting energy and angular momentum at the microscale demonstrates spontaneous collective states that range from flocks to coherent vortices. Despite their seeming…

Soft Condensed Matter · Physics 2020-11-16 Bo Zhang , Benjamin Hilton , Christopher Short , Anton Souslov , Alexey Snezhko

Active gels are a class of biologically-relevant material containing embedded agents that spontaneously generate forces acting on a sparse filament network. In vitro experiments of protein filaments and molecular motors have revealed a…

Soft Condensed Matter · Physics 2024-06-03 David A. Head , Gerhard Gompper , W. J. Briels

Flows over remarkably long distances are crucial to the functioning of many organisms, across all kingdoms of life. Coordinated flows are fundamental to power deformations, required for migration or development, or to spread resources and…

Biological Physics · Physics 2018-10-19 Jean-Daniel Julien , Karen Alim

We have used numerical simulations to investigate how the properties of motor proteins control the dynamical behavior of a driven flexible filament. The filament is pinned at one end and positioned on top of a patch of anchored motor…

Soft Condensed Matter · Physics 2024-09-20 Amir Khosravanizadeh , Serge Dmitrieff

We extend the model of surface granular flow proposed in \cite{bcre} to account for the effect of an external `wind', which acts as to dislodge particles from the static bed, such that a stationary state of flowing grains is reached. We…

Condensed Matter · Physics 2009-10-31 Orestis Terzidis , Philippe Claudin , Jean-Philippe Bouchaud

We present a simple and generic theoretical description of actin-based motility, where polymerization of filaments maintains propulsion. The dynamics is driven by polymerization kinetics at the filaments' free ends, crosslinking of the…

Cell Behavior · Quantitative Biology 2015-05-13 Azam Gholami , Martin Falcke , Erwin Frey

The unicellular microalga Chlamydomonas reinhardtii is widely recognized as a premier model living microswimmer for physicists and biophysicists. However, the interest around C. reinhardtii goes beyond its swimming capabilities. In fact,…

We investigate the 2D instability recently discussed by Gallet et al. (2010) and Ilin \& Morgulis (2013) which arises when a radial crossflow is imposed on a centrifugally-stable swirling flow. By finding a simpler rectilinear example of…

Fluid Dynamics · Physics 2023-07-19 R. R. Kerswell

Many-body interactions in systems of active matter can cause particles to move collectively and self-organize into dynamic structures with long-range order. In cells, the self-assembly of cytoskeletal filaments is critical for cellular…

Soft Condensed Matter · Physics 2020-05-26 Jeffrey M. Moore , Matthew A. Glaser , Meredith D. Betterton

The static friction between crystalline surfaces separated by a molecularly thin layer of adsorbed molecules is calculated using molecular dynamics simulations. These molecules naturally lead to a finite static friction that is consistent…

Materials Science · Physics 2009-11-07 Gang He , Mark O. Robbins

Recent experimental observations have demonstrated interesting instability phenomenon during thermal drawing of microstructured glass/polymer fibers, and these observations motivate us to examine surface-tension-driven instabilities in…

Fluid Dynamics · Physics 2011-08-12 D. S. Deng , J. -C. Nave , X. Liang , S. G. Johnson , Y. Fink

We investigate the linear instability of flows that are stable according to Rayleigh's criterion for rotating fluids. Using Taylor-Couette flow as a primary test case, we develop large Reynolds number matched asymptotic expansion theories.…

Fluid Dynamics · Physics 2025-03-12 Kengo Deguchi , Ming Dong

Until now it was not a success to identify a universal triggering mechanism for the formation of the observed cyclon-anticyclon vortex asymmetry phenomenon or the corresponding breaking of chiral vortex symmetry in the rotating medium. In…

Fluid Dynamics · Physics 2014-06-05 Sergey G. Chefranov

Most microorganisms use hair-like cilia with asymmetric beating to perform vital bio-physical processes. In this paper, we demonstrate a novel fabrication method for creating magnetic artificial cilia capable of such biologically inspired…

Biological Physics · Physics 2018-06-13 Srinivas Hanasoge , Matthew Ballard , Peter J. Hesketh , Alexander Alexeev

We present the results of large scale molecular dynamics simulations aimed at understanding the origins of high friction coefficients in pure metals, and their concomitant reduction in alloys and composites. We utilize a series of targeted…

Materials Science · Physics 2021-05-10 Shengfeng Cheng , Michael Chandross

We study the origin of buoyancy forces acting on a larger particle moving in a granular medium subject to horizontal shaking and its corrections before fluidization. In the fluid limit Archimedes' law is verified; before the limit memory…

Mathematical Physics · Physics 2011-06-22 Christian Maes , Simi R. Thomas

A number of strange results have been reported for the twist elasticity of a semiflexible filament, actin. In particular dynamic and static methods for determining the torsional twist modulus give very different results. I show here that…

Soft Condensed Matter · Physics 2007-05-23 A. C. Maggs