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Mathematical models are increasingly a part of microbiological research. Here, we share our perspective on how modeling advances the discipline by: (i) enforcing logical consistency, (ii) enabling quantitative prediction, (iii) extracting…

Other Quantitative Biology · Quantitative Biology 2026-04-22 Jamie A. Lopez , Amir Erez

An algebraic analysis framework for quantum calculus is proposed. The quantum derivative operator $D_{\tau ,\sigma}$ is based on two commuting bijections $\tau$ and $\sigma$ defined on an arbitrary set $M$ equipped with a tension structure…

Quantum Algebra · Mathematics 2010-12-30 Piotr Multarzynski

Programmability is a unifying paradigm for enacting families of quantum transformations via fixed processors and program states, with a fundamental role and broad impact in quantum computation and control. While there has been a shift from…

Quantum Physics · Physics 2025-12-10 Mingrui Jing , Mengbo Guo , Lin Zhu , Hongshun Yao , Xin Wang

Bayesian inference and the use of posterior or posterior predictive probabilities for decision making have become increasingly popular in clinical trials. The current practice in Bayesian clinical trials relies on a hybrid…

Methodology · Statistics 2024-04-30 Shirin Golchi , James Willard

In this paper we consider a network of spatially distributed sensors which collect measurement samples of a spatial field, and aim at estimating in a distributed way (without any central coordinator) the entire field by suitably fusing all…

Systems and Control · Computer Science 2018-05-23 Francesco Sasso , Angelo Coluccia , Giuseppe Notarstefano

This paper focuses on Bayesian Optimization in combinatorial spaces. In many applications in the natural science. Broad applications include the study of molecules, proteins, DNA, device structures and quantum circuit designs, a on…

Machine Learning · Computer Science 2020-11-13 Tony C. Wu , Daniel Flam-Shepherd , Alán Aspuru-Guzik

We propose a general algorithmic framework for Bayesian model selection. A spike-and-slab Laplacian prior is introduced to model the underlying structural assumption. Using the notion of effective resistance, we derive an EM-type algorithm…

Methodology · Statistics 2020-06-19 Youngseok Kim , Chao Gao

When planning motions in a configuration space that has underlying symmetries (e.g. when manipulating one or multiple symmetric objects), the ideal planning algorithm should take advantage of those symmetries to produce shorter…

Robotics · Computer Science 2025-07-18 Thomas Cohn , Russ Tedrake

We propose a taxonomy for quantum algorithms grounded in the fundamental symmetries, both continuous and discrete, underlying quantum state spaces, oracles, and circuit dynamics. By organizing algorithms according to their symmetry groups…

Quantum Physics · Physics 2025-08-14 Sakshi Kumar , Sumit Chilkoti , Mrittunjoy Guha Majumdar

The study of almost surely discrete random probability measures is an active line of research in Bayesian nonparametrics. The idea of assuming interaction across the atoms of the random probability measure has recently spurred significant…

Statistics Theory · Mathematics 2025-04-25 Mario Beraha , Raffaele Argiento , Federico Camerlenghi , Alessandra Guglielmi

We propose an interdisciplinary framework that combines Bayesian predictive inference, a well-established tool in Machine Learning, with Formal Methods rooted in the computer science community. Bayesian predictive inference allows for…

Computation · Statistics 2025-08-21 Laura Vana , Ennio Visconti , Laura Nenzi , Annalisa Cadonna , Gregor Kastner

The identification of the interfacial molecules in fluid-fluid equilibrium is a long-standing problem in the area of simulation. We here propose a new point of view, making use of concepts taken from the field of computational geometry,…

Soft Condensed Matter · Physics 2009-04-30 Florencio Balboa Usabiaga , Daniel Duque

The symmetric interaction combinators are an equally expressive variant of Lafont's interaction combinators. They are a graph-rewriting model of deterministic computation. We define two notions of observational equivalence for them,…

Logic in Computer Science · Computer Science 2015-07-01 Damiano Mazza

Author developed a uniform model for different spaces where distance and angle measure kinds are parameters. This model is calculus centric, but can also be used in theoretical research. It is useful in the following domains: deduction of…

Metric Geometry · Mathematics 2018-07-30 Alexandru Popa

In this expository paper we present a brief introduction to the geometrical modeling of some quantum computing problems. After a brief introduction to establish the terminology, we focus on quantum information geometry and ZX-calculus,…

Quantum Physics · Physics 2024-03-07 E. Ercolessi , R. Fioresi , T. Weber

The geometry of (2,1) supersymmetric sigma-models is reviewed and the conditions under which they have isometry symmetries are analysed. Certain potentials are constructed that play an important role in the gauging of such symmetries. The…

High Energy Physics - Theory · Physics 2011-07-19 M. Abou Zeid , C. M. Hull

We propose a graph-based process calculus for modeling and reasoning about wireless networks with local broadcasts. Graphs are used at syntactical level to describe the topological structures of networks. This calculus is equipped with a…

Logic in Computer Science · Computer Science 2017-06-19 Shichao Liu , Ying Jiang

Gaussian Process (GP) regression is a powerful nonparametric Bayesian framework, but its performance depends critically on the choice of covariance kernel. Selecting an appropriate kernel is therefore central to model quality, yet remains…

Machine Learning · Computer Science 2026-01-14 Md Shafiqul Islam , Shakti Prasad Padhy , Douglas Allaire , Raymundo Arróyave

There is increasing interest in the problem of nonparametric regression with high-dimensional predictors. When the number of predictors $D$ is large, one encounters a daunting problem in attempting to estimate a $D$-dimensional surface…

Statistics Theory · Mathematics 2014-06-17 Yun Yang , David B. Dunson

We study learning problems in which the conditional distribution of the output given the input varies as a function of additional task variables. In varying-coefficient models with Gaussian process priors, a Gaussian process generates the…

Machine Learning · Computer Science 2015-10-15 Matthias Bussas , Christoph Sawade , Tobias Scheffer , Niels Landwehr