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Reconstructing who infected whom is a central challenge in analysing epidemiological data. Recently, advances in sequencing technology have led to increasing interest in Bayesian approaches to inferring who infected whom using genetic data…

Quantitative Methods · Quantitative Biology 2016-09-30 Michelle Kendall , Diepreye Ayabina , Caroline Colijn

Transitioning from Phase 2 to Phase 3 in drug development, at a rate of $\approx$40%, is the most stringent among phase transitions (Hay et al. (2014)). Yet, success rate at Phase 3 leading to approval is only $\approx$50% (Arrowsmith…

Methodology · Statistics 2025-10-29 Yujia Sun , Yang Han , Xingya Wang , Szu-Yu Tang , Yushi Liu , Jason C. Hsu

Outcome probability estimation via classical methods is an important task for validating quantum computing devices. Outcome probabilities of any quantum circuit can be estimated using Monte Carlo sampling, where the amount of negativity…

Quantum Physics · Physics 2022-10-14 Nikolaos Koukoulekidis , Hyukjoon Kwon , Hyejung H. Jee , David Jennings , M. S. Kim

Forecasting is critical in areas such as finance, biology, and healthcare. Despite the progress in the field, making accurate forecasts remains challenging because real-world time series contain both global trends, local fine-grained…

Machine Learning · Computer Science 2026-01-01 Zihao Chen , Alexandre Andre , Wenrui Ma , Ian Knight , Sergey Shuvaev , Eva Dyer

Despite the widespread use and success of machine-learning techniques for detecting phase transitions from data, their working principle and fundamental limits remain elusive. Here, we explain the inner workings and identify potential…

Disordered Systems and Neural Networks · Physics 2023-11-20 Julian Arnold , Niels Lörch , Flemming Holtorf , Frank Schäfer

We consider the inference of the structure of an undirected graphical model in an exact Bayesian framework. More specifically we aim at achieving the inference with close-form posteriors, avoiding any sampling step. This task would be…

Machine Learning · Statistics 2017-05-02 Loïc Schwaller , Stéphane Robin , Michael Stumpf

Models often need to be constrained to a certain size for them to be considered interpretable. For example, a decision tree of depth 5 is much easier to understand than one of depth 50. Limiting model size, however, often reduces accuracy.…

Machine Learning · Computer Science 2020-07-02 Abhishek Ghose , Balaraman Ravindran

A stochastic epidemic model is defined in which each individual belongs to a household, a secondary grouping (typically school or workplace) and also the community as a whole. Moreover, infectious contacts take place in these three settings…

Applications · Statistics 2009-08-17 Tom Britton , Theodore Kypraios , Philip O'Neill

Random forests construct each tree with a different, randomised representation of the feature space. Their uniform voting cannot correct errors in regions where trees with incorrect representations probabilistically outnumber correct ones,…

Machine Learning · Computer Science 2026-05-28 Youngjoon Park

Random graphs have played an instrumental role in modelling real-world networks arising from the internet topology, social networks, or even protein-interaction networks within cells. Percolation, on the other hand, has been the fundamental…

Probability · Mathematics 2018-09-12 Souvik Dhara

In deep neural networks, better results can often be obtained by increasing the complexity of previously developed basic models. However, it is unclear whether there is a way to boost performance by decreasing the complexity of such models.…

Machine Learning · Computer Science 2022-06-07 Junran Wu , Shangzhe Li , Jianhao Li , Yicheng Pan , Ke Xu

Motivated by the increasing need to understand the distributed algorithmic foundations of large-scale graph computations, we study some fundamental graph problems in a message-passing model for distributed computing where $k \geq 2$…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-27 Gopal Pandurangan , Peter Robinson , Michele Scquizzato

Principal component analysis (PCA) aims at estimating the direction of maximal variability of a high-dimensional dataset. A natural question is: does this task become easier, and estimation more accurate, when we exploit additional…

Information Theory · Computer Science 2014-06-19 Andrea Montanari , Emile Richard

Distribution testing is a fundamental statistical task with many applications, but we are interested in a variety of problems where systematic mislabelings of the sample prevent us from applying the existing theory. To apply distribution…

Data Structures and Algorithms · Computer Science 2023-04-05 Renato Ferreira Pinto , Nathaniel Harms

Consider an information source generating a symbol at the root of a tree network whose links correspond to noisy communication channels, and broadcasting it through the network. We study the problem of reconstructing the transmitted symbol…

Statistical Mechanics · Physics 2009-11-11 Marc Mezard , Andrea Montanari

Understanding the behaviors of information propagation is essential for the effective exploitation of social influence in social networks. However, few existing influence models are tractable and efficient for describing the information…

Social and Information Networks · Computer Science 2012-06-11 Biao Xiang , Enhong Chen , Qi Liu , Hui Xiong , Yu Yang , Junyuan Xie

We quantify the emergent complexity of quantum states near quantum critical points on regular 1D lattices, via complex network measures based on quantum mutual information as the adjacency matrix, in direct analogy to quantifying the…

Statistical Mechanics · Physics 2017-12-06 Marc Andrew Valdez , Daniel Jaschke , David L. Vargas , Lincoln D. Carr

Social contexts -- such as families, schools, and neighborhoods -- shape life outcomes. The key question is not simply whether they matter, but rather for whom and under what conditions. Here, we argue that prediction gaps -- differences in…

Social and Information Networks · Computer Science 2025-07-01 Javier Garcia-Bernardo , Eva Jaspers , Weverthon Machado , Samuel Plach , Erik Jan van Leeuwen

In this paper we extend our previous work on the stochastic block model, a commonly used generative model for social and biological networks, and the problem of inferring functional groups or communities from the topology of the network. We…

Statistical Mechanics · Physics 2013-05-09 Aurelien Decelle , Florent Krzakala , Cristopher Moore , Lenka Zdeborová

Tree models for rigidity percolation are introduced and solved. A probability vector describes the propagation of rigidity outward from a rigid border. All components of this ``vector order parameter'' are singular at the same rigidity…

Statistical Mechanics · Physics 2009-10-30 Cristian F. Moukarzel , Phillip M. Duxbury , Paul L. Leath
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