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GROMACS is a widely-used molecular dynamics software package with a focus on performance, portability, and maintainability across a broad range of platforms. Thanks to its early algorithmic redesign and flexible heterogeneous…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-09-26 Andrey Alekseenko , Szilárd Páll , Erik Lindahl

Heterogeneous computing integrates diverse processing elements, such as CPUs, GPUs, and FPGAs, within a single system, aiming to leverage the strengths of each architecture to optimize performance and energy consumption. In this context,…

Performance · Computer Science 2025-11-19 Maksymilian Graczyk , Vincent Desbiolles , Stefan Roiser , Andrea Guerrieri

Building and deploying software on high-end computing systems is a challenging task. High performance applications have to reliably run across multiple platforms and environments, and make use of site-specific resources while resolving…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-12 Lucas Benedicic , Felipe A. Cruz , Alberto Madonna , Kean Mariotti

Currently, the most energy-efficient hardware platforms for floating point-intensive calculations (also known as High Performance Computing, or HPC) are graphical processing units (GPUs). However, porting existing scientific codes to GPUs…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-28 Michele Martone , Julia Lawall

We present a unified programming model for heterogeneous computing systems. Such systems integrate multiple computing accelerators and memory units to deliver higher performance than CPU-centric systems. Although heterogeneous systems have…

Emerging Technologies · Computer Science 2024-04-18 Zixuan Wang , Jishen Zhao

We define some of the programming and system-level challenges facing the application of quantum processing to high-performance computing. Alongside barriers to physical integration, prominent differences in the execution of quantum and…

Quantum Physics · Physics 2017-12-06 Keith A. Britt , Fahd A. Mohiyaddin , Travis S. Humble

This paper consists of three parts. The first part provides a unified programming model for heterogeneous computing with CPU and accelerator (like GPU, FPGA, Google TPU, Atos QPU, and more) technologies. To some extent, this new programming…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-31 Yuqing Xiong

This thesis (extended abstract) presents the software development efforts toward efficient exploitation of heterogeneity through intricate mapping of computational kernels, collaborative execution of multiple processing elements and…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-26 Siqi Wang

C is the lingua franca of programming and almost any device can be programmed using C. However, programming mod-ern heterogeneous architectures such as multi-core CPUs and GPUs requires explicitly expressing parallelism as well as…

OpenCL is an attractive model for heterogeneous high-performance computing systems, with wide support from hardware vendors and significant performance portability. To support efficient scheduling on HPC systems it is necessary to perform…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-04 Beau Johnston , Greg Falzon , Josh Milthorpe

In this paper, we introduce a software-defined framework that enables the parallel utilization of all the programmable processing resources available in heterogeneous system-on-chip (SoC) including FPGA-based hardware accelerators and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-02-12 Jose Nunez-Yanez , Mohammad Hosseinabady , Moslem Amiri , Andrés Rodríguez , Rafael Asenjo , Angeles Navarro , Rubén Gran-Tejero , Darío Suárez-Gracia

The paradigm shift towards multi-core and heterogeneous computing, driven by the fundamental power and thermal limits of single-core processors, has established energy efficiency as a first-class design constraint in high-performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-30 Mufakir Qamar Ansari , Mudabir Qamar Ansari

Sparse matrix-vector multiplication (SpMV) is one of the most important kernels in high-performance computing (HPC), yet SpMV normally suffers from ill performance on many devices. Due to ill performance, SpMV normally requires special care…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-01-09 Phillip Allen Lane , Joshua Dennis Booth

Many important real-world applications, such as System Identification with Gaussian Processes, involve solving linear systems with symmetric positive-definite matrices. The iterative CG method and direct solvers based on the Cholesky…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-14 Tim Thüring , Alexander Strack , Dirk Pflüger

The ability to model, analyze, and predict execution time of computations is an important building block supporting numerous efforts, such as load balancing, performance optimization, and automated performance tuning for high performance,…

Performance · Computer Science 2020-06-22 James D. Stevens , Andreas Klöckner

High-performance computing (HPC) is essential for tackling complex computational problems across various domains. As the scale and complexity of HPC applications continue to grow, the need for scalable systems and software architectures…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-21 Risshab Srinivas Ramesh

FPGAs have found increasing adoption in data center applications since a new generation of high-level tools have become available which noticeably reduce development time for FPGA accelerators and still provide high quality of results.…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Marius Meyer , Tobias Kenter , Christian Plessl

Many HPC applications can be expressed as mixed-mode computations, in which each node of a computational DAG is itself a parallel computation that can be molded at runtime to allocate different amounts of processing resources. At the same…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-10 Agnes Rohlin , Henrik Fahlgren , Miquel Pericas

HiCCL (Hierarchical Collective Communication Library) addresses the growing complexity and diversity in high-performance network architectures. As GPU systems have envolved into networks of GPUs with different multilevel communication…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-13 Mert Hidayetoglu , Simon Garcia de Gonzalo , Elliott Slaughter , Pinku Surana , Wen-mei Hwu , William Gropp , Alex Aiken

In this era of diverse and heterogeneous computer architectures, the programmability issues, such as productivity and portable efficiency, are crucial to software development and algorithm design. One way to approach the problem is to step…

Mathematical Software · Computer Science 2012-07-10 Mauro Bianco , Ugo Varetto
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