English
Related papers

Related papers: GraSPy: Graph Statistics in Python

200 papers

We present SPEAR, an open-source python library for data programming with semi supervision. The package implements several recent data programming approaches including facility to programmatically label and build training data. SPEAR…

PyGOD is an open-source Python library for detecting outliers in graph data. As the first comprehensive library of its kind, PyGOD supports a wide array of leading graph-based methods for outlier detection under an easy-to-use,…

Machine Learning · Computer Science 2024-06-04 Kay Liu , Yingtong Dou , Xueying Ding , Xiyang Hu , Ruitong Zhang , Hao Peng , Lichao Sun , Philip S. Yu

HyperNetX (HNX) is an open source Python library for the analysis and visualization of complex network data modeled as hypergraphs. Initially released in 2019, HNX facilitates exploratory data analysis of complex networks using algebraic…

Mathematical Software · Computer Science 2023-10-19 Brenda Praggastis , Sinan Aksoy , Dustin Arendt , Mark Bonicillo , Cliff Joslyn , Emilie Purvine , Madelyn Shapiro , Ji Young Yun

Graph Neural Networks (GNNs) have recently shown to be powerful tools for representing and analyzing graph data. So far GNNs is becoming an increasingly critical role in software engineering including program analysis, type inference, and…

Artificial Intelligence · Computer Science 2021-02-17 Jintang Li , Kun Xu , Liang Chen , Zibin Zheng , Xiao Liu

RNA 3D architectures are stabilized by sophisticated networks of (non-canonical) base pair interactions, which can be conveniently encoded as multi-relational graphs and efficiently exploited by graph theoretical approaches and recent…

Quantitative Methods · Quantitative Biology 2022-06-03 Vincent Mallet , Carlos Oliver , Jonathan Broadbent , William L. Hamilton , Jérôme Waldispühl

Spectral Toolkit of Algorithms for Graphs (STAG) is an open-source library for efficient graph algorithms. This technical report presents the newly implemented component on locality sensitive hashing, kernel density estimation, and fast…

Data Structures and Algorithms · Computer Science 2024-07-11 Peter Macgregor , He Sun

Gammapy is a Python package for high-level gamma-ray data analysis built on Numpy, Scipy and Astropy. It enables us to analyze gamma-ray data and to create sky images, spectra and lightcurves, from event lists and instrument response…

stream-learn is a Python package compatible with scikit-learn and developed for the drifting and imbalanced data stream analysis. Its main component is a stream generator, which allows to produce a synthetic data stream that may incorporate…

Machine Learning · Computer Science 2020-01-31 Paweł Ksieniewicz , Paweł Zyblewski

We introduce TurboGP, a Genetic Programming (GP) library fully written in Python and specifically designed for machine learning tasks. TurboGP implements modern features not available in other GP implementations, such as island and cellular…

Neural and Evolutionary Computing · Computer Science 2023-09-04 Lino Rodriguez-Coayahuitl , Alicia Morales-Reyes , Hugo Jair Escalante

We implement Ananke: an object-oriented Python package for causal inference with graphical models. At the top of our inheritance structure is an easily extensible Graph class that provides an interface to several broadly useful graph-based…

Methodology · Statistics 2023-01-30 Jaron J. R. Lee , Rohit Bhattacharya , Razieh Nabi , Ilya Shpitser

Mining and storage of data from software repositories is typically done on a per-project basis, where each project uses a unique combination of data schema, extraction tools, and (intermediate) storage infrastructure. We introduce…

Software Engineering · Computer Science 2020-08-17 Alex Serban , Magiel Bruntink , Joost Visser

Despite being the most popular programming language, Python has not yet received enough attention from the community. To the best of our knowledge, there is no general static analysis framework proposed to facilitate the implementation of…

Software Engineering · Computer Science 2022-02-25 Li Li , Jiawei Wang , Haowei Quan

NIFTY, "Numerical Information Field Theory", is a software package designed to enable the development of signal inference algorithms that operate regardless of the underlying spatial grid and its resolution. Its object-oriented framework is…

Instrumentation and Methods for Astrophysics · Physics 2013-06-06 Marco Selig , Michael R. Bell , Henrik Junklewitz , Niels Oppermann , Martin Reinecke , Maksim Greiner , Carlos Pachajoa , Torsten A. Enßlin

AsaPy is a custom-made Python library designed to simplify and optimize the analysis of aerospace simulation data. Instead of introducing new methodologies, it excels in combining various established techniques, creating a unified,…

Decision making theories such as Fuzzy-Trace Theory (FTT) suggest that individuals tend to rely on gist, or bottom-line meaning, in the text when making decisions. In this work, we delineate the process of developing GisPy, an open-source…

Computation and Language · Computer Science 2022-05-26 Pedram Hosseini , Christopher R. Wolfe , Mona Diab , David A. Broniatowski

The R arules package implements a comprehensive infrastructure for representing, manipulating, and analyzing transaction data and patterns using frequent itemsets and association rules. The package also provides a wide range of interest…

Databases · Computer Science 2023-05-25 Michael Hahsler

Variational inference is an increasingly popular method in statistics and machine learning for approximating probability distributions. We developed LINFA (Library for Inference with Normalizing Flow and Annealing), a Python library for…

Machine Learning · Computer Science 2023-07-17 Yu Wang , Emma R. Cobian , Jubilee Lee , Fang Liu , Jonathan D. Hauenstein , Daniele E. Schiavazzi

FCMpy is an open source package in Python for building and analyzing Fuzzy Cognitive Maps. More specifically, the package allows 1) deriving fuzzy causal weights from qualitative data, 2) simulating the system behavior, 3) applying machine…

Mathematical Software · Computer Science 2022-11-03 Samvel Mkhitaryan , Philippe J. Giabbanelli , Maciej K. Wozniak , Gonzalo Napoles , Nanne K. de Vries , Rik Crutzen

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

Novelpy (v1.2) is an open-source Python package designed to compute bibliometrics indicators. The package aims to provide a tool to the scientometrics community that centralizes different measures of novelty and disruptiveness, enables…

Digital Libraries · Computer Science 2022-11-21 Pierre Pelletier , Kevin Wirtz