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Spontaneous self-assembly in molecular systems is a fundamental route to both biological and engineered soft matter. Simple micellisation, emulsion formation, and polymer mixing principles are well understood. However, the principles behind…

Soft Condensed Matter · Physics 2021-09-21 Alberto Scacchi , Sousa Javan Nikkhah , Maria Sammalkorpi , Tapio Ala-Nissila

A simplified model of clonal plant growth is formulated, motivated by observations of spatial structures in Posidonia oceanica meadows in the Mediterranean Sea. Two levels of approximation are considered for the scale-dependent feedback…

Pattern Formation and Solitons · Physics 2020-09-18 Daniel Ruiz-Reynes , Luis Martin , Emilio Hernandez-Garcia , Edgar Knobloch , Damia Gomila

Accretion of mineralized thin wall-like structures via localized growth along their edges is observed in a range of physical and biological systems ranging from molluscan and brachiopod shells to carbonate-silica composite precipitates. To…

Soft Condensed Matter · Physics 2022-02-23 C. Nadir Kaplan , L. Mahadevan

In this paper, we study a nonlinear system of first order partial differential equations describing the macroscopic behavior of an ensemble of interacting self-propelled rigid bodies. Such system may be relevant for the modelling of bird…

Analysis of PDEs · Mathematics 2022-10-31 Pierre Degond , Amic Frouvelle , Sara Merino-Aceituno , Ariane Trescases

We perform a linear perturbation analysis of expanding shells driven by expansions of HII regions. The ambient gas is assumed to be uniform. As an unperturbed state, we develop a semi-analytic method for deriving the time evolution of the…

Astrophysics of Galaxies · Physics 2015-05-27 Kazunari Iwasaki , Shu-ichiro Inutsuka , Toru Tsuribe

We propose and test a model that describes the morphology of cities, the scaling of the urban perimeter of individual cities, and the area distribution of systems of cities. The model is also consistent with observable urban growth…

Disordered Systems and Neural Networks · Physics 2009-10-31 Hernan A. Makse , Jose S. Andrade , Michael Batty , Shlomo Havlin , H. Eugene Stanley

Many growth processes lead to intriguing stochastic patterns and complex fractal structures which exhibit local scale invariance properties. Such structures can often be described effectively by space-time trajectories of interacting…

Statistical Mechanics · Physics 2013-06-07 Adnan Ali , Robin C. Ball , Stefan Grosskinsky , Ellak Somfai

Locally finite self-similar graphs with bounded geometry and without bounded geometry as well as non-locally finite self-similar graphs are characterized by the structure of their cell graphs. Geometric properties concerning the volume…

Combinatorics · Mathematics 2007-05-23 Bernhard Krön

Growth-elasticity is a powerful model framework for understanding complex shape development in soft biological tissues. At each instant, by mapping how continuum building blocks have grown geometrically and how they respond elastically to…

Numerical Analysis · Mathematics 2024-10-23 Min Wu

The Self-similar-structure shell model (SSM) comes from the evolution of the conventional shell model (SM) and keeps the energy level of SM single particle harmonic oscillation motion. In SM, single particle motion is the positive harmonic…

Nuclear Theory · Physics 2012-03-01 Zhengda Wang , Xiaobin Wang , Xiaodong Zhang , Xiaochun Wang

A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…

Biological Physics · Physics 2010-10-05 Julia Pulwicki , David Hobill

We present a simple three-dimensional model to describe the autonomous expansion of a substrate which grows driven by the local mean curvature of its surface. The model aims to reproduce the nest construction process in arboreal…

Adaptation and Self-Organizing Systems · Physics 2020-02-11 Giulio Facchini , Alexandre Lazarescu , Andrea Perna , Stéphan Douady

We perform a numerical free evolution of a selfgravitating, spherically symmetric scalar field satisfying the wave equation. The evolution equations can be written in a very simple form and are symmetric hyperbolic in Eddington-Finkelstein…

General Relativity and Quantum Cosmology · Physics 2009-11-07 Mirta S. Iriondo , Oscar A. Reula

We report numerical investigations of a three-dimensional model of diffusive growth of fine particles, the internal structure of which corresponds to different crystal lattices. A growing cluster (particle) is immersed in, and exchanges…

Statistical Mechanics · Physics 2010-10-12 Vyacheslav Gorshkov , Alexandr Zavalov , Vladimir Privman

The problem of selecting a model given a set of candidates remains a challenging one that pervades many scientific fields. We employ techniques from the theory of Lie groups to analyse the symmetries in differential equation models of…

Quantitative Methods · Quantitative Biology 2023-10-10 Reemon Spector

Models of tumor growth, now commonly used, present several levels of complexity, both in terms of the biomedical ingredients and the mathematical description. The simplest ones contain competition for space using purely fluid mechanical…

Analysis of PDEs · Mathematics 2015-06-12 Benoît Perthame , Fernando Quirós , Juan Luis Vázquez

The patterns arising from the differential swelling of gels are investigated experimentally and theoretically as a model for the differential growth of living tissues. Two geometries are considered: a thin strip of soft gel clamped to a…

Soft Condensed Matter · Physics 2009-11-11 Thierry Mora , Arezki Boudaoud

A polymer network can imbibe water, forming an aggregate called hydrogel, and undergo large and inhomogeneous deformation with external mechanical constraint. Due to the large deformation, nonlinearity plays a crucial role, which also…

Biological Physics · Physics 2011-03-04 Hui-Hui Dai , Zilong Song

In this paper, we propose a novel one-dimensional (1D) discrete differential geometry (DDG)-based numerical method for geometrically nonlinear mechanics analysis (e.g., buckling and snapping) of axisymmetric shell structures. Our numerical…

Soft Condensed Matter · Physics 2024-10-01 Weicheng Huang , Tianzhen Liu , Zhaowei Liu , Peifei Xu , Mingchao Liu , Yuzhen Chen , K. Jimmy Hsia

An analytic phenomenological shell model mass formula for light nuclei is constructed., The formula takes into account the non locality of the self consistent single particle potential and the special features of light nuclei, namely: a)…

Nuclear Theory · Physics 2012-07-26 Mariano Bauer , Hugo Garcia Tecocoatzi , Cristian Mojica