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Knowledge of the severity of an influenza outbreak is crucial for informing and monitoring appropriate public health responses, both during and after an epidemic. However, case-fatality, case-intensive care admission and…

Each year, seasonal influenza epidemics cause hundreds of thousands of deaths worldwide and put high loads on health care systems. A main concern for resource planning is the risk of exceptionally severe epidemics. Taking advantage of…

Applications · Statistics 2021-06-29 Maud Thomas , Holger Rootzén

The World Health Organization added Disease X to their shortlist of blueprint priority diseases to represent a hypothetical, unknown pathogen that could cause a future epidemic. During different virus outbreaks of the past, such as…

Social and Information Networks · Computer Science 2023-12-20 Nirmalya Thakur , Shuqi Cui , Kesha A. Patel , Isabella Hall , Yuvraj Nihal Duggal

Integrating data from multiple heterogeneous sources has become increasingly popular to achieve a large sample size and diverse study population. This paper reviews development in causal inference methods that combines multiple datasets…

Methodology · Statistics 2021-10-05 Xu Shi , Ziyang Pan , Wang Miao

Governments around the world continue to act to contain and mitigate the spread of COVID-19. The rapidly evolving situation compels officials and executives to continuously adapt policies and social distancing measures depending on the…

Applications · Statistics 2021-02-19 Giacomo De Nicola , Marc Schneble , Göran Kauermann , Ursula Berger

Models of contagion dynamics, originally developed for infectious diseases, have proven relevant to the study of information, news, and political opinions in online social systems. Modelling diffusion processes and predicting viral…

Physics and Society · Physics 2019-06-19 Weihua Li , Skyler J. Cranmer , Zhiming Zheng , Peter J. Mucha

The complex interplay between population movements in space and non-homogeneous mixing patterns have so far hindered the fundamental understanding of the conditions for spatial invasion through a general theoretical framework. To address…

Physics and Society · Physics 2014-01-21 Andrea Apolloni , Chiara Poletto , Jose' J. Ramasco , Pablo Jensen , Vittoria Colizza

This study estimates the overall effect of two influenza vaccination programs consecutively administered in a cluster-randomized trial in western Senegal over the course of two influenza seasons from 2009-2011. We apply cutting-edge…

We study metapopulation models for the spread of epidemics in which different subpopulations (cities) are connected by fluxes of individuals (travelers). This framework allows to describe the spread of a disease on a large scale and we…

Populations and Evolution · Quantitative Biology 2008-03-20 Aurelien Gautreau , Alain Barrat , Marc Barthelemy

Contact tracing data collected from disease outbreaks has received relatively little attention in the epidemic modelling literature because it is thought to be unreliable: infection sources might be wrongly attributed, or data might be…

Methodology · Statistics 2012-03-16 Chris Jewell , Gareth Roberts

In many cases, tainted information in a computer network can spread in a way similar to an epidemics in the human world. On the other had, information processing paths are often redundant, so a single infection occurrence can be easily…

Physics and Society · Physics 2024-03-07 Franco Bagnoli , Emanuele Bellini , Emanuele Massaro

Anomaly detection in network traffic is crucial for maintaining the security of computer networks and identifying malicious activities. One of the primary approaches to anomaly detection are methods based on forecasting. Nevertheless,…

Machine Learning · Computer Science 2024-09-30 Josef Koumar , Karel Hynek , Tomáš Čejka , Pavel Šiška

We study the global spatio-temporal patterns of influenza dynamics. This is achieved by analysing and modelling weekly laboratory confirmed cases of influenza A and B from 138 countries between January 2006 and May 2014. The data were…

Populations and Evolution · Quantitative Biology 2016-01-20 Daihai He , Roger Lui , Lin Wang , Chi Kong Tse , Lin Yang , Lewi Stone

Downsizing the US public health workforce throughout 2025 amplifies potential risks during public health crises. Expert judgment from public health officials represents a vital information source, distinct from traditional surveillance…

Populations and Evolution · Quantitative Biology 2025-08-22 Garrik Hoyt , Eleanor Bergren , Gabrielle String , Thomas McAndrew

We develop a multiple compartment Susceptible-Infected-Recovered (SIR) model to analyze the spread of several infectious diseases through different geographic areas. Additionally, we propose a data-quality sensitive optimization framework…

Populations and Evolution · Quantitative Biology 2019-06-21 Inbar Seroussi , Nir Levy , Daniela Paolotti , Nir Sochen , Elad Yom-Tov

Disease spreading through human travel networks has been a topic of great interest in recent years, as witnessed during outbreaks of influenza A (H1N1) or SARS pandemics. One way to stop spreading over the airline network are travel…

Physics and Society · Physics 2012-05-16 Jose Marcelino , Marcus Kaiser

The Internet is transforming our society, necessitating a quantitative understanding of Internet traffic. Our team collects and curates the largest publicly available Internet traffic data sets. An analysis of 50 billion packets using…

The study of spreading processes often analyzes networks at different resolutions, e.g., at the level of individuals or countries, but it is not always clear how properties at one resolution can carry over to another. Accordingly, in this…

Physics and Society · Physics 2024-12-04 Baike She , Matthew Hale

Causal inference across multiple data sources offers a promising avenue to enhance the generalizability and replicability of scientific findings. However, data integration methods for time-to-event outcomes, common in biomedical research,…

Methodology · Statistics 2025-05-16 Yi Liu , Alexander W. Levis , Ke Zhu , Shu Yang , Peter B. Gilbert , Larry Han

The exploration of epidemic dynamics on dynamically evolving ("adaptive") networks poses nontrivial challenges to the modeler, such as the determination of a small number of informative statistics of the detailed network state (that is, a…

Quantitative Methods · Quantitative Biology 2015-07-07 Assimakis A. Kattis , Alexander Holiday , Ana-Andreea Stoica , Ioannis G. Kevrekidis