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We show that neural networks can be optimized to represent minimum energy paths as continuous functions, offering a flexible alternative to discrete path-search methods such as Nudged Elastic Band (NEB). Our approach parameterizes reaction…

Machine Learning · Computer Science 2025-07-10 Kalyan Ramakrishnan , Lars L. Schaaf , Chen Lin , Guangrun Wang , Philip Torr

Directed evolution is an iterative laboratory process of designing proteins with improved function by iteratively synthesizing new protein variants and evaluating their desired property with expensive and time-consuming biochemical…

Machine Learning · Computer Science 2025-09-08 Matouš Soldát , Jiří Kléma

Surrogate models are used to reduce the burden of expensive-to-evaluate objective functions in optimization. By creating models which map genomes to objective values, these models can estimate the performance of unknown inputs, and so be…

Neural and Evolutionary Computing · Computer Science 2019-07-17 Alexander Hagg , Martin Zaefferer , Jörg Stork , Adam Gaier

Predictive coding networks are neural models that perform inference through an iterative energy minimization process, whose operations are local in space and time. While effective in shallow architectures, they suffer significant…

Machine Learning · Computer Science 2025-10-13 Chang Qi , Matteo Forasassi , Thomas Lukasiewicz , Tommaso Salvatori

Recurrent Neural Networks are an effective and prevalent tool used to model sequential data such as natural language text. However, their deep nature and massive number of parameters pose a challenge for those intending to study precisely…

Computation and Language · Computer Science 2020-08-18 Lindsey Sawatzky , Steven Bergner , Fred Popowich

Neural Radiance Fields (NeRFs) have emerged as powerful tools for capturing detailed 3D scenes through continuous volumetric representations. Recent NeRFs utilize feature grids to improve rendering quality and speed; however, these…

Computer Vision and Pattern Recognition · Computer Science 2024-06-14 Tuan Pham , Stephan Mandt

Reconstruction of gene regulatory networks is the process of identifying gene dependency from gene expression profile through some computation techniques. In our human body, though all cells pose similar genetic material but the activation…

Symbolic regression (SR) is a powerful technique for discovering the analytical mathematical expression from data, finding various applications in natural sciences due to its good interpretability of results. However, existing methods face…

Machine Learning · Computer Science 2024-07-11 Xieting Chu , Hongjue Zhao , Enze Xu , Hairong Qi , Minghan Chen , Huajie Shao

The remarkable growth and significant success of machine learning have expanded its applications into programming languages and program analysis. However, a key challenge in adopting the latest machine learning methods is the representation…

Programming Languages · Computer Science 2023-12-01 Ali TehraniJamsaz , Quazi Ishtiaque Mahmud , Le Chen , Nesreen K. Ahmed , Ali Jannesari

Graph neural networks (GNNs) have emerged as a powerful framework for a wide range of node-level graph learning tasks. However, their performance typically depends on random or minimally informed initial feature representations, where poor…

Machine Learning · Computer Science 2026-02-24 Shiyu Chen , Cencheng Shen , Youngser Park , Carey E. Priebe

Probabilistic embeddings have several advantages over deterministic embeddings as they map each data point to a distribution, which better describes the uncertainty and complexity of data. Many works focus on adjusting the distribution…

Artificial Intelligence · Computer Science 2024-12-16 Xiang Huang , Hao Peng , Li Sun , Hui Lin , Chunyang Liu , Jiang Cao , Philip S. Yu

Convolutional Neural Networks (CNNs) have recently emerged as the dominant model in computer vision. If provided with enough training data, they predict almost any visual quantity. In a discrete setting, such as classification, CNNs are not…

Computer Vision and Pattern Recognition · Computer Science 2015-11-25 Deepak Pathak , Philipp Krähenbühl , Stella X. Yu , Trevor Darrell

Graph representation learning has become a hot research topic due to its powerful nonlinear fitting capability in extracting representative node embeddings. However, for sequential data such as speech signals, most traditional methods…

Sound · Computer Science 2024-05-08 Yingxue Gao , Huan Zhao , Zixing Zhang

With the recent success of embeddings in natural language processing, research has been conducted into applying similar methods to code analysis. Most works attempt to process the code directly or use a syntactic tree representation,…

Machine Learning · Computer Science 2018-11-30 Tal Ben-Nun , Alice Shoshana Jakobovits , Torsten Hoefler

Deep neural networks are used for a wide range of regression problems. However, there exists a significant gap in accuracy between specialized approaches and generic direct regression in which a network is trained by minimizing the squared…

Machine Learning · Computer Science 2022-12-06 Deval Shah , Zi Yu Xue , Tor M. Aamodt

Efficient text embedding is crucial for large-scale natural language processing (NLP) applications, where storage and computational efficiency are key concerns. In this paper, we explore how using binary representations (barcodes) instead…

Computation and Language · Computer Science 2025-07-24 Soumen Sinha , Shahryar Rahnamayan , Azam Asilian Bidgoli

We introduce Neural Representation of Distribution (NeRD) technique, a module for convolutional neural networks (CNNs) that can estimate the feature distribution by optimizing an underlying function mapping image coordinates to the feature…

Image and Video Processing · Electrical Eng. & Systems 2021-03-10 Hang Zhang , Rongguang Wang , Jinwei Zhang , Chao Li , Gufeng Yang , Pascal Spincemaille , Thanh Nguyen , Yi Wang

Binary Neural Networks (BNNs), which constrain both weights and activations to binary values, offer substantial reductions in computational complexity, memory footprint, and energy consumption. These advantages make them particularly well…

Machine Learning · Computer Science 2026-02-18 Luca Colombo , Fabrizio Pittorino , Daniele Zambon , Carlo Baldassi , Manuel Roveri , Cesare Alippi

AI systems frequently exhibit and amplify social biases, leading to harmful consequences in critical areas. This study introduces a novel encoder-decoder approach that leverages model gradients to learn a feature neuron encoding societal…

Machine Learning · Computer Science 2026-03-10 Jonathan Drechsel , Steffen Herbold

Graph neural networks (GNNs) excel at predictive tasks on graph-structured data but often lack the ability to incorporate symbolic domain knowledge and perform general reasoning. Relational Bayesian Networks (RBNs), in contrast, enable…

Artificial Intelligence · Computer Science 2025-07-30 Raffaele Pojer , Andrea Passerini , Kim G. Larsen , Manfred Jaeger
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