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In this paper we evaluate the performance of topological features for generalizable and robust classification of firn image data, with the broader goal of understanding the advantages, pitfalls, and trade-offs in topological featurization.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-24 Sarah Day , Jesse Dimino , Matt Jester , Kaitlin Keegan , Thomas Weighill

Feature space is an environment where data points are vectorized to represent the original dataset. Reconstructing a good feature space is essential to augment the AI power of data, improve model generalization, and increase the…

Machine Learning · Computer Science 2024-11-11 Wangyang Ying , Haoyue Bai , Kunpeng Liu , Yanjie Fu

Inferring the parameters of models describing biological systems is an important problem in the reverse engineering of the mechanisms underlying these systems. Much work has focused on parameter inference of stochastic and ordinary…

Quantitative Methods · Quantitative Biology 2021-11-09 Thomas Thorne , Paul D. W. Kirk , Heather A. Harrington

Machine learning methods usually rely on large sample size to have good performance, while it is difficult to provide labeled set in many applications. Pool-based active learning methods are there to detect, among a set of unlabeled data,…

Machine Learning · Computer Science 2023-10-04 Lies Hadjadj , Emilie Devijver , Remi Molinier , Massih-Reza Amini

Supervised machine learning often requires large training sets to train accurate models, yet obtaining large amounts of labeled data is not always feasible. Hence, it becomes crucial to explore active learning methods for reducing the size…

Machine Learning · Computer Science 2024-04-16 Ashna Jose , Emilie Devijver , Massih-Reza Amini , Noel Jakse , Roberta Poloni

Various kinds of data are routinely represented as discrete probability distributions. Examples include text documents summarized by histograms of word occurrences and images represented as histograms of oriented gradients. Viewing a…

Computational Geometry · Computer Science 2019-03-29 Herbert Edelsbrunner , Ziga Virk , Hubert Wagner

We start with a simple introduction to topological data analysis where the most popular tool is called a persistent diagram. Briefly, a persistent diagram is a multiset of points in the plane describing the persistence of topological…

Statistics Theory · Mathematics 2017-06-28 Christophe Biscio , Jesper Møller

This paper presents a statistically sound method for measuring the accuracy with which a probabilistic model reflects the growth of a network, and a method for optimising parameters in such a model. The technique is data-driven, and can be…

Networking and Internet Architecture · Computer Science 2009-04-07 Richard Clegg , Raul Landa , Uli Harder , Miguel Rio

Algebraic topology has been widely applied to point cloud data to capture geometric shapes and topological structures. However, its application to genome sequence analysis remains rare. In this work, we propose topological sequence analysis…

Algebraic Topology · Mathematics 2025-07-09 Jian Liu , Li Shen , Dong Chen , Guo-Wei Wei

Data analysis in high-dimensional spaces aims at obtaining a synthetic description of a data set, revealing its main structure and its salient features. We here introduce an approach providing this description in the form of a topography of…

Machine Learning · Statistics 2021-03-02 Maria d'Errico , Elena Facco , Alessandro Laio , Alex Rodriguez

As a part of the Data-Centric AI Competition, we propose a data-centric approach to improve the diversity of the training samples by iterative sampling. The method itself relies strongly on the fidelity of augmented samples and the…

Machine Learning · Computer Science 2021-11-09 Devrim Cavusoglu , Ogulcan Eryuksel , Sinan Altinuc

Topological Data Analysis (TDA) offers a suite of computational tools that provide quantified shape features in high dimensional data that can be used by modern statistical and predictive machine learning (ML) models. In particular,…

Cryptography and Security · Computer Science 2023-07-06 Dominic Gold , Koray Karabina , Francis C. Motta

The rising interest in leveraging higher-order interactions present in complex systems has led to a surge in more expressive models exploiting higher-order structures in the data, especially in topological deep learning (TDL), which designs…

Understanding how the spatial structure of blood vessel networks relates to their function in healthy and abnormal biological tissues could improve diagnosis and treatment for diseases such as cancer. New imaging techniques can generate…

Quantitative Methods · Quantitative Biology 2019-07-23 Helen M Byrne , Heather A Harrington , Ruth Muschel , Gesine Reinert , Bernadette J Stolz , Ulrike Tillmann

This paper concerns a theoretical approach that combines topological data analysis (TDA) and sheaf theory. Topological data analysis, a rising field in mathematics and computer science, concerns the shape of the data and has been proven…

Computer Vision and Pattern Recognition · Computer Science 2020-12-04 Chuan-Shen Hu , Yu-Min Chung

In this paper, we propose a sensitivity-free and multi-objective structural design methodology called data-driven topology design. It is schemed to obtain high-performance material distributions from initially given material distributions…

Computational Physics · Physics 2025-05-02 Shintaro Yamasaki , Kentaro Yaji , Kikuo Fujita

Topological methods are very rarely used in structural health monitoring (SHM), or indeed in structural dynamics generally, especially when considering the structure and topology of observed data. Topological methods can provide a way of…

Human-Computer Interaction · Computer Science 2022-09-14 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

We present a new, systematic approach for analyzing network topologies. We first introduce the dK-series of probability distributions specifying all degree correlations within d-sized subgraphs of a given graph G. Increasing values of d…

Networking and Internet Architecture · Computer Science 2008-04-16 Priya Mahadevan , Dmitri Krioukov , Kevin Fall , Amin Vahdat

A large number of explicit estimators are proposed in this paper for loss rate estimation in a network of the tree topology. All of the estimators are proved to be unbiased and consistent instead of asymptotic unbiased as that obtained in…

Information Theory · Computer Science 2015-08-06 Weiping Zhu

Although neural networks are capable of reaching astonishing performances on a wide variety of contexts, properly training networks on complicated tasks requires expertise and can be expensive from a computational perspective. In industrial…

Machine Learning · Statistics 2021-05-11 Théo Lacombe , Yuichi Ike , Mathieu Carriere , Frédéric Chazal , Marc Glisse , Yuhei Umeda