Related papers: Probing Biomedical Embeddings from Language Models

Word embeddings are trained to predict word cooccurrence statistics, which leads them to possess different lexical properties (syntactic, semantic, etc.) depending on the notion of context defined at training time. These properties manifest…

Word embeddings such as ELMo have recently been shown to model word semantics with greater efficacy through contextualized learning on large-scale language corpora, resulting in significant improvement in state of the art across many…

We investigate contract element extraction. We show that LSTM-based encoders perform better than dilated CNNs, Transformers, and BERT in this task. We also find that domain-specific WORD2VEC embeddings outperform generic pre-trained GLOVE…

Recently, Large Language Models (LLM) have demonstrated impressive capability to solve a wide range of tasks. However, despite their success across various tasks, no prior work has investigated their capability in the biomedical domain yet.…

Large Transformer-based language models such as BERT have led to broad performance improvements on many NLP tasks. Domain-specific variants of these models have demonstrated excellent performance on a variety of specialised tasks. In legal…

Deep learning approaches are superior in NLP due to their ability to extract informative features and patterns from languages. The two most successful neural architectures are LSTM and transformers, used in large pretrained language models…

While the success of pre-trained language models has largely eliminated the need for high-quality static word vectors in many NLP applications, such vectors continue to play an important role in tasks where words need to be modelled in the…

We study the utility of the lexical translation model (IBM Model 1) for English text retrieval, in particular, its neural variants that are trained end-to-end. We use the neural Model1 as an aggregator layer applied to context-free or…

Recent work explored the potential of large-scale Transformer-based pre-trained models, especially Pre-trained Language Models (PLMs) in natural language processing. This raises many concerns from various perspectives, e.g., financial costs…

In this paper we investigate the linguistic knowledge learned by a Neural Language Model (NLM) before and after a fine-tuning process and how this knowledge affects its predictions during several classification problems. We use a wide set…

Contextualized word embeddings (CWE) such as provided by ELMo (Peters et al., 2018), Flair NLP (Akbik et al., 2018), or BERT (Devlin et al., 2019) are a major recent innovation in NLP. CWEs provide semantic vector representations of words…

Making an informed choice of pre-trained language model (LM) is critical for performance, yet environmentally costly, and as such widely underexplored. The field of Computer Vision has begun to tackle encoder ranking, with promising forays…

Pre-training a language model and then fine-tuning it for downstream tasks has demonstrated state-of-the-art results for various NLP tasks. Pre-training is usually independent of the downstream task, and previous works have shown that this…

Pre-trained language models (PTLMs) acquire domain-independent linguistic knowledge through pre-training with massive textual resources. Additional pre-training is effective in adapting PTLMs to domains that are not well covered by the…

The clinical named entity recognition (CNER) task seeks to locate and classify clinical terminologies into predefined categories, such as diagnostic procedure, disease disorder, severity, medication, medication dosage, and sign symptom.…

Large pre-trained language models such as BERT have been the driving force behind recent improvements across many NLP tasks. However, BERT is only trained to predict missing words - either behind masks or in the next sentence - and has no…

Reading comprehension, a fundamental cognitive ability essential for knowledge acquisition, is a complex skill, with a notable number of learners lacking proficiency in this domain. This study introduces innovative tasks for Brain-Computer…

The advancement of Large Language Models (LLMs) has significantly impacted biomedical Natural Language Processing (NLP), enhancing tasks such as named entity recognition, relation extraction, event extraction, and text classification. In…

Coreference resolution in biomedical texts presents unique challenges due to complex domain-specific terminology, high ambiguity in mention forms, and long-distance dependencies between coreferring expressions. In this work, we present a…

Most state-of-the-art models in natural language processing (NLP) are neural models built on top of large, pre-trained, contextual language models that generate representations of words in context and are fine-tuned for the task at hand.…