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When it comes to solving optimization problems with evolutionary algorithms (EAs) in a reliable and scalable manner, detecting and exploiting linkage information, i.e., dependencies between variables, can be key. In this article, we present…

Neural and Evolutionary Computing · Computer Science 2021-09-14 Arkadiy Dushatskiy , Marco Virgolin , Anton Bouter , Dirk Thierens , Peter A. N. Bosman

In Symbolic Regression (SR), achieving a proper balance between accuracy and interpretability remains a key challenge. The Genetic Programming variant of the Gene-pool Optimal Mixing Evolutionary Algorithm (GP-GOMEA) is of particular…

Neural and Evolutionary Computing · Computer Science 2025-07-08 Joe Harrison , Tanja Alderliesten. Peter A. N. Bosman

Currently, the genetic programming version of the gene-pool optimal mixing evolutionary algorithm (GP-GOMEA) is among the top-performing algorithms for symbolic regression (SR). A key strength of GP-GOMEA is its way of performing variation,…

Neural and Evolutionary Computing · Computer Science 2022-04-27 Marco Virgolin , Peter A. N. Bosman

The goal in Symbolic Regression (SR) is to discover expressions that accurately map input to output data. Because often the intent is to understand these expressions, there is a trade-off between accuracy and the interpretability of…

Neural and Evolutionary Computing · Computer Science 2025-05-05 Joe Harrison , Peter A. N. Bosman , Tanja Alderliesten

The Gene-pool Optimal Mixing EA (GOMEA) family of EAs offers a specific means to exploit problem-specific knowledge through linkage learning, i.e., inter-variable dependency detection, expressed using subsets of variables, that should…

Neural and Evolutionary Computing · Computer Science 2025-07-01 Renzo J. Scholman , Tanja Alderliesten , Peter A. N. Bosman

GP-GOMEA is among the state-of-the-art for symbolic regression, especially when it comes to finding small and potentially interpretable solutions. A key mechanism employed in any GOMEA variant is the exploitation of linkage, the…

Neural and Evolutionary Computing · Computer Science 2026-02-03 Johannes Koch , Tanja Alderliesten , Peter A. N. Bosman

Deploying machine learning models into sensitive domains in our society requires these models to be explainable. Genetic Programming (GP) can offer a way to evolve inherently interpretable expressions. GP-GOMEA is a form of GP that has been…

Neural and Evolutionary Computing · Computer Science 2024-02-16 Thalea Schlender , Mafalda Malafaia , Tanja Alderliesten , Peter A. N. Bosman

The Gene-pool Optimal Mixing Evolutionary Algorithm (GOMEA) is a state of the art evolutionary algorithm that leverages linkage learning to efficiently exploit problem structure. By identifying and preserving important building blocks…

Neural and Evolutionary Computing · Computer Science 2024-07-12 Yukai Qiao , Marcus Gallagher

Optimal Mixing (OM) is a variation operator that integrates local search with genetic recombination. EAs with OM are capable of state-of-the-art optimization in discrete spaces, offering significant advantages over classic…

Neural and Evolutionary Computing · Computer Science 2025-06-19 Anton Bouter , Dirk Thierens , Peter A. N. Bosman

Model-Based Evolutionary Algorithms (MBEAs) can be highly scalable by virtue of linkage (or variable interaction) learning. This requires, however, that the linkage model can capture the exploitable structure of a problem. Usually, a single…

Neural and Evolutionary Computing · Computer Science 2022-03-14 Arthur Guijt , Dirk Thierens , Tanja Alderliesten , Peter A. N. Bosman

Large Language Models (LLMs) have demonstrated remarkable capabilities across various tasks, with their performance heavily dependent on the quality of input prompts. While prompt engineering has proven effective, it typically relies on…

Neural and Evolutionary Computing · Computer Science 2025-04-17 Xavier Sécheresse , Jacques-Yves Guilbert--Ly , Antoine Villedieu de Torcy

Symbolic regression is the process of identifying mathematical expressions that fit observed output from a black-box process. It is a discrete optimization problem generally believed to be NP-hard. Prior approaches to solving the problem…

Neural and Evolutionary Computing · Computer Science 2021-11-19 T. Nathan Mundhenk , Mikel Landajuela , Ruben Glatt , Claudio P. Santiago , Daniel M. Faissol , Brenden K. Petersen

Symbolic regression is a machine learning method with the goal to produce interpretable results. Unlike other machine learning methods such as, e.g. random forests or neural networks, which are opaque, symbolic regression aims to model and…

Machine Learning · Computer Science 2024-06-07 Yousef A. Radwan , Gabriel Kronberger , Stephan Winkler

In the realm of machine learning, traditional model development and automated approaches like AutoML typically rely on layers of abstraction, such as tree-based or Cartesian genetic programming. Our study introduces "Guided Evolution" (GE),…

Neural and Evolutionary Computing · Computer Science 2024-07-18 Clint Morris , Michael Jurado , Jason Zutty

Bayesian networks model relationships between random variables under uncertainty and can be used to predict the likelihood of events and outcomes while incorporating observed evidence. From an eXplainable AI (XAI) perspective, such models…

Machine Learning · Computer Science 2024-02-20 Damy M. F. Ha , Tanja Alderliesten , Peter A. N. Bosman

Multi-objective optimization is a common problem in practical applications, and multi-objective evolutionary algorithm (MOEA) is considered as one of the effective methods to solve these problems. However, their randomness sometimes…

Neural and Evolutionary Computing · Computer Science 2024-10-04 Wanyi Liu , Long Chen , Zhenzhou Tang

Traditional Linear Genetic Programming (LGP) algorithms are based only on the selection mechanism to guide the search. Genetic operators combine or mutate random portions of the individuals, without knowing if the result will lead to a…

Neural and Evolutionary Computing · Computer Science 2017-04-05 Léo Françoso Dal Piccol Sotto , Vinícius Veloso de Melo

Evolutionary algorithms (EAs) have achieved remarkable success in tackling complex combinatorial optimization problems. However, EAs often demand carefully-designed operators with the aid of domain expertise to achieve satisfactory…

Neural and Evolutionary Computing · Computer Science 2024-04-29 Shengcai Liu , Caishun Chen , Xinghua Qu , Ke Tang , Yew-Soon Ong

Linear mixed models (LMMs) are a powerful and established tool for studying genotype-phenotype relationships. A limiting assumption of LMMs is that the residuals are Gaussian distributed, a requirement that rarely holds in practice.…

Genomics · Quantitative Biology 2014-08-10 Nicolo Fusi , Christoph Lippert , Neil D. Lawrence , Oliver Stegle

Large language models (LLMs) are increasingly adapted to downstream tasks via reinforcement learning (RL) methods like Group Relative Policy Optimization (GRPO), which often require thousands of rollouts to learn new tasks. We argue that…

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