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Sequence comparison across multiple organisms aids in the detection of regions under selection. However, resource limitations require a prioritization of genomes to be sequenced. This prioritization should be grounded in two considerations:…

Genomics · Quantitative Biology 2007-05-23 Jon D. McAuliffe , Michael I. Jordan , Lior Pachter

This survey focuses on the most important aspects of the mathematical theory of population genetic models of selection and migration between discrete niches. Such models are most appropriate if the dispersal distance is short compared to…

Populations and Evolution · Quantitative Biology 2019-12-13 Reinhard Bürger

Evolutionary branching is analysed in a stochastic, individual-based population model under mutation and selection. In such models, the common assumption is that individual reproduction and life career are characterised by values of a…

Populations and Evolution · Quantitative Biology 2025-10-01 S. Sagitov , B. Mehlig , P. Jagers , V. Vatutin

Consider a branching Markov process with values in some general type space. Conditional on survival up to generation $N$, the genealogy of the extant population defines a random marked metric measure space, where individuals are marked by…

Probability · Mathematics 2023-07-12 Félix Foutel-Rodier , Emmanuel Schertzer

We investigate the impact of Allee effect and dispersal on the long-term evolution of a population in a patchy environment, focusing on whether a population already established in one patch either successfully invades an adjacent empty…

Classical Analysis and ODEs · Mathematics 2010-03-02 Yun Kang , Nicolas Lanchier

Moran or Wright-Fisher processes are probably the most well known model to study the evolution of a population under various effects. Our object of study will be the Simpson index which measures the level of diversity of the population, one…

Probability · Mathematics 2018-09-25 Arnaud Personne , Arnaud Guillin , Franck Jabot , Arnaud Guillin

Genetic information and environmental factors determine the path of an individuals life and therefore, the evolution of its entire species. We have succeeded in proposing and studying a model that captures this idea. In our model, a…

Populations and Evolution · Quantitative Biology 2021-07-28 N. Abadi , G. Abramson

We consider the mutation--selection differential equation with pairwise interaction (or, equivalently, the diploid mutation--selection equation) and establish the corresponding ancestral process, which is a random tree and a variant of the…

Probability · Mathematics 2023-04-26 Ellen Baake , Fernando Cordero , Sebastian Hummel

We construct a reliable estimation of evolutionary parameters within the Wright-Fisher model, which describes changes in allele frequencies due to selection and genetic drift, from time-series data. Such data exists for biological…

Populations and Evolution · Quantitative Biology 2023-05-26 Juan Guerrero Montero , Richard A. Blythe

Frequently one has to search within a finite population for a single particular individual or item with a rare characteristic. Whether an item possesses the characteristic can only be determined by close inspection. The availability of…

Probability · Mathematics 2013-10-23 André J. Hoogstrate , Chris A. J. Klaassen

Found in varied contexts from neurons to ants to fish, binary decision-making is one of the simplest forms of collective computation. In this process, information collected by individuals about an uncertain environment is accumulated to…

Neurons and Cognition · Quantitative Biology 2019-03-26 Bryan C. Daniels , Pawel Romanczuk

Consider two forms of sampling from a population: (i) drawing $s$ samples of $n$ elements with replacement and (ii) drawing a single sample of $ns$ elements. In this paper, under the setting where the descending order population frequency…

Statistics Theory · Mathematics 2018-02-05 Koji Tsukuda , Shuhei Mano

Branching and weak probabilistic bisimilarities are two well-known notions capturing behavioral equivalence between nondeterministic probabilistic systems. For probabilistic systems, divergence is of major concern. Recently several…

Logic in Computer Science · Computer Science 2024-12-31 Hao Wu , Yuxi Fu , Huan Long , Xian Xu , Wenbo Zhang

We investigate the problem of the predominance and survival of "weak" species in the context of the simplest generalization of the spatial stochastic rock-paper-scissors model to four species by considering models in which one, two, or…

Populations and Evolution · Quantitative Biology 2020-07-01 P. P. Avelino , B. F. de Oliveira , R. S. Trintin

In ecology, species can mitigate their extinction risks in uncertain environments by diversifying individual phenotypes. This observation is quantified by the theory of bet-hedging, which provides a reason for the degree of phenotypic…

Populations and Evolution · Quantitative Biology 2019-06-19 Paula Villa Martín , Miguel A. Muñoz , Simone Pigolotti

This paper deals with the existence of global weak solutions for a wide class of (multiple species) cross-diffusions systems. The existence is based on two different ingredients: an entropy estimate giving some gradient control and a…

Analysis of PDEs · Mathematics 2016-09-28 Thomas Lepoutre , Ayman Moussa

In this paper, we discuss a hierarchical model, based on a Ricker competition model. The species considered are competing for resources and may be subject to an Allee effect due to mate limitation, anti-predator vigilance or aggression,…

Populations and Evolution · Quantitative Biology 2023-02-07 Eddy Kwessi

Species growing in environments that change in time and space will vary in their abundance across locations, even in the absence of persistent location preferences. Here we quantify this non-equilibrium effect by studying a minimal model of…

Populations and Evolution · Quantitative Biology 2026-03-04 James F. D. Henderson , Andreas Tiffeau-Mayer

Altruistic behaviour is disadvantageous for the individual while is advantageous for its group. If the target of the selection is the individual, one would expect the selection process to lead to populations formed by wholly homogeneous…

adap-org · Physics 2008-02-03 R. Donato , L. Peliti , M. Serva

We introduce a branching process in a sparse random environment as an intermediate model between a Galton--Watson process and a branching process in a random environment. In the critical case we investigate the survival probability and…

Probability · Mathematics 2023-06-13 Dariusz Buraczewski , Congzao Dong , Alexander Iksanov , Alexander Marynych
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