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Elucidating gene function is one of the ultimate goals of plant science. Despite this, only ~15% of all genes in the model plant Arabidopsis thaliana have comprehensively experimentally verified functions. While bioinformatical gene…

Molecular Networks · Quantitative Biology 2024-08-15 Rohan Shawn Sunil , Shan Chun Lim , Manoj Itharajula , Marek Mutwil

We consider the problem of finding nearly optimal solutions of optimization problems with random objective functions. Two concrete problems we consider are (a) optimizing the Hamiltonian of a spherical or Ising $p$-spin glass model, and (b)…

Computational Complexity · Computer Science 2022-01-27 David Gamarnik , Aukosh Jagannath , Alexander S. Wein

We investigate the convergence properties of the EM algorithm when applied to overspecified Gaussian mixture models -- that is, when the number of components in the fitted model exceeds that of the true underlying distribution. Focusing on…

Machine Learning · Statistics 2025-06-16 Zhenisbek Assylbekov , Alan Legg , Artur Pak

Boolean functions with good cryptographic properties like high nonlinearity and algebraic degree play an important in the security of stream and block ciphers. Such functions may be designed, for instance, by algebraic constructions or…

Neural and Evolutionary Computing · Computer Science 2025-01-31 Claude Carlet , Marko Ðurasevic , Domagoj Jakobovic , Luca Mariot , Stjepan Picek

This paper proposes a statistical verification framework using Gaussian processes (GPs) for simulation-based verification of stochastic nonlinear systems with parametric uncertainties. Given a small number of stochastic simulations, the…

Systems and Control · Computer Science 2017-10-03 John F. Quindlen , Ufuk Topcu , Girish Chowdhary , Jonathan P. How

A genetic programming system is created. A first fitness function f1 is used to evolve a program that implements a first feature. Then the fitness function is switched to a second function f2, which is used to evolve a program that…

Neural and Evolutionary Computing · Computer Science 2011-04-05 Mike Stimpson

Quality of General Game Playing (GGP) matches suffers from slow state-switching and weak knowledge modules. Instantiation and Propositional Networks offer great performance gains over Prolog-based reasoning, but do not scale well. In this…

Artificial Intelligence · Computer Science 2014-01-24 Adrian Łańcucki

We return to the geometry optimization problem of Lennard-Jones clusters to analyze the performance dependence of "cut and splice" genetic algorithms (GAs) on the employed population size. We generally find that admixing twinning mutation…

Materials Science · Physics 2015-05-13 Vladimir A. Froltsov , Karsten Reuter

Genetic Programming (GP) is an evolutionary algorithm commonly used for machine learning tasks. In this paper we present a method that allows GP to transform the representation of a large-scale machine learning dataset into a more compact…

Neural and Evolutionary Computing · Computer Science 2018-02-21 Lino Rodriguez-Coayahuitl , Alicia Morales-Reyes , Hugo Jair Escalante

The ability to autonomously explore and resolve tasks with minimal human guidance is crucial for the self-development of embodied intelligence. Although reinforcement learning methods can largely ease human effort, it's challenging to…

Robotics · Computer Science 2024-12-19 Changxin Huang , Yanbin Chang , Junfan Lin , Junyang Liang , Runhao Zeng , Jianqiang Li

Obstacle-aware trajectory navigation is crucial for many systems. For example, in real-world navigation tasks, an agent must avoid obstacles, such as furniture in a room, while planning a trajectory. Gaussian Process (GP) regression, in its…

Machine Learning · Computer Science 2024-12-10 Gaurav Shrivastava

Test-time scaling has emerged as a promising direction for enhancing the reasoning capabilities of Large Language Models in last few years. In this work, we propose Population-Evolve, a training-free method inspired by Genetic Algorithms to…

Artificial Intelligence · Computer Science 2025-12-23 Yanzhi Zhang , Yitong Duan , Zhaoxi Zhang , Jiyan He , Shuxin Zheng

Bayesian model updating based on Gaussian Process (GP) models has received attention in recent years, which incorporates kernel-based GPs to provide enhanced fidelity response predictions. Although most kernel functions provide high fitting…

Connectivity networks have recently become widely used in biology due to increasing amounts of information on the physical and functional links between individual proteins. This connectivity data provides valuable material for expanding our…

Genomics · Quantitative Biology 2013-02-15 O. V. Valba , S. K. Nechaev , O. Vasieva

In this work we introduce a mixture of GPs to address the data association problem, i.e. to label a group of observations according to the sources that generated them. Unlike several previously proposed GP mixtures, the novel mixture has…

Machine Learning · Statistics 2011-08-18 Miguel Lázaro-Gredilla , Steven Van Vaerenbergh , Neil Lawrence

We present an approach for satisfying state constraints in systems with nonparametric uncertainty by estimating this uncertainty with a real-time-update Gaussian process (GP) model. Notably, new data is incorporated into the model in real…

Systems and Control · Electrical Eng. & Systems 2025-05-13 Ricardo Gutierrez , Jesse B. Hoagg

In this paper, after analyzing the reasons of poor generalization and overfitting in neural networks, we consider some noise data as a singular value of a continuous function - jump discontinuity point. The continuous part can be…

Neural and Evolutionary Computing · Computer Science 2013-02-05 Hou Muzhou , Moon Ho Lee

Deep neural networks' remarkable ability to correctly fit training data when optimized by gradient-based algorithms is yet to be fully understood. Recent theoretical results explain the convergence for ReLU networks that are wider than…

Machine Learning · Computer Science 2021-02-09 Asaf Noy , Yi Xu , Yonathan Aflalo , Lihi Zelnik-Manor , Rong Jin

Graph convolutional networks (GCNs) are powerful deep neural networks for graph-structured data. However, GCN computes the representation of a node recursively from its neighbors, making the receptive field size grow exponentially with the…

Machine Learning · Statistics 2018-03-02 Jianfei Chen , Jun Zhu , Le Song

Gaussian processes (GPs) are non-parametric probabilistic regression models that are popular due to their flexibility, data efficiency, and well-calibrated uncertainty estimates. However, standard GP models assume homoskedastic Gaussian…

Machine Learning · Computer Science 2025-01-08 Sebastian Ament , Elizabeth Santorella , David Eriksson , Ben Letham , Maximilian Balandat , Eytan Bakshy