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The dipole moment is a physical quantity indicating the polarity of a molecule and is determined by reflecting the electrical properties of constituent atoms and the geometric properties of the molecule. Most embeddings used to represent…

Machine Learning · Computer Science 2022-06-28 Yang Jeong Park

Deep learning has been successful in automating the design of features in machine learning pipelines. However, the algorithms optimizing neural network parameters remain largely hand-designed and computationally inefficient. We study if we…

Machine Learning · Computer Science 2021-10-26 Boris Knyazev , Michal Drozdzal , Graham W. Taylor , Adriana Romero-Soriano

One of the most common and important destructive attacks on the victim system is Advanced Persistent Threat (APT)-attack. The APT attacker can achieve his hostile goals by obtaining information and gaining financial benefits regarding the…

Cryptography and Security · Computer Science 2021-01-19 Javad Hassannataj Joloudari , Mojtaba Haderbadi , Amir Mashmool , Mohammad GhasemiGol , Shahab S. , Amir Mosavi

Deep learning is an important method for molecular design and exhibits considerable ability to predict molecular properties, including physicochemical, bioactive, and ADME/T (absorption, distribution, metabolism, excretion, and toxicity)…

Molecular Networks · Quantitative Biology 2022-05-10 Hanxuan Cai , Huimin Zhang , Duancheng Zhao , Jingxing Wu , Ling Wang

The limits of molecular dynamics (MD) simulations of macromolecules are steadily pushed forward by the relentless developments of computer architectures and algorithms. This explosion in the number and extent (in size and time) of MD…

Predicting material properties base on micro structure of materials has long been a challenging problem. Recently many deep learning methods have been developed for material property prediction. In this study, we propose a crystal…

Materials Science · Physics 2022-11-22 Xiangrui Yang

Prediction and discovery of new materials with desired properties are at the forefront of quantum science and technology research. A major bottleneck in this field is the computational resources and time complexity related to finding new…

GNN-based methods have achieved excellent results as a mainstream task in drug response prediction tasks in recent years. Traditional GNN methods use only the atoms in a drug molecule as nodes to obtain the representation of the molecular…

Biomolecules · Quantitative Biology 2024-12-12 Kun Li , Jia Wu , Bo Du , Sergey V. Petoukhov , Huiting Xu , Zheman Xiao , Wenbin Hu

Product-specific guidances (PSGs) recommended by the United States Food and Drug Administration (FDA) are instrumental to promote and guide generic drug product development. To assess a PSG, the FDA assessor needs to take extensive time and…

Computation and Language · Computer Science 2022-07-26 Yiwen Shi , Jing Wang , Ping Ren , Taha ValizadehAslani , Yi Zhang , Meng Hu , Hualou Liang

In drug discovery, knowledge of the graph structure of chemical compounds is essential. Many thousands of scientific articles in chemistry and pharmaceutical sciences have investigated chemical compounds, but in cases the details of the…

Machine Learning · Statistics 2020-09-16 Martijn Oldenhof , Adam Arany , Yves Moreau , Jaak Simm

Dynamic Positron Emission Tomography (dPET) imaging and Time-Activity Curve (TAC) analyses are essential for understanding and quantifying the biodistribution of radiopharmaceuticals over time and space. Traditional compartmental modeling,…

Machine Learning · Computer Science 2024-06-03 Niloufar Zakariaei , Arman Rahmim , Eldad Haber

Dynamic Text-Attributed Graphs (DyTAGs) are a novel graph paradigm that captures evolving temporal events (edges) alongside rich textual attributes. Existing studies can be broadly categorized into TGNN-driven and LLM-driven approaches,…

Machine Learning · Computer Science 2025-08-04 Yuanyuan Xu , Wenjie Zhang , Ying Zhang , Xuemin Lin , Xiwei Xu

Graph neural networks have recently become a standard method for analysing chemical compounds. In the field of molecular property prediction, the emphasis is now put on designing new model architectures, and the importance of atom…

Chemical Physics · Physics 2021-02-15 Agnieszka Pocha , Tomasz Danel , Łukasz Maziarka

Protein mutations can have profound effects on biological function, making accurate prediction of property changes critical for drug discovery, protein engineering, and precision medicine. Current approaches rely on fine-tuning…

Machine Learning · Computer Science 2025-10-27 Srivathsan Badrinarayanan , Yue Su , Janghoon Ock , Alan Pham , Sanya Ahuja , Amir Barati Farimani

Efficient catalyst screening necessitates predictive models for adsorption energy, a key property of reactivity. However, prevailing methods, notably graph neural networks (GNNs), demand precise atomic coordinates for constructing graph…

Computational Engineering, Finance, and Science · Computer Science 2023-09-04 Janghoon Ock , Chakradhar Guntuboina , Amir Barati Farimani

Artificial Intelligence algorithms are introduced in this work as a tool to predict the performance of new chemical compounds as alternative propellants for electric propulsion, focusing on predicting their ionisation characteristics and…

Instrumentation and Methods for Astrophysics · Physics 2025-10-01 Angel Pan Du , Miguel Arana-Catania , Enric Grustan Gutiérrez

We apply a Transformer architecture, specifically BERT, to learn flexible and high quality molecular representations for drug discovery problems. We study the impact of using different combinations of self-supervised tasks for pre-training,…

Machine Learning · Computer Science 2020-11-30 Benedek Fabian , Thomas Edlich , Héléna Gaspar , Marwin Segler , Joshua Meyers , Marco Fiscato , Mohamed Ahmed

Affective computing is an important branch of artificial intelligence, and with the rapid development of brain computer interface technology, emotion recognition based on EEG signals has received broad attention. It is still a great…

Signal Processing · Electrical Eng. & Systems 2022-12-26 Yongling Xu , Yang Du , Jing Zou , Tianying Zhou , Lushan Xiao , Li Liu , Pengcheng

Background: Breast cancer is a multifactorial disease, genetic and environmental factors will affect its incidence probability. Breast cancer metastasis is one of the main cause of breast cancer related deaths reported by the American…

Machine Learning · Computer Science 2022-10-13 Chuhan Xu , Xia Jiang

Deep learning has been widely adopted in automatic emotion recognition and has lead to significant progress in the field. However, due to insufficient annotated emotion datasets, pre-trained models are limited in their generalization…

Computer Vision and Pattern Recognition · Computer Science 2020-06-25 Dung Nguyen , Sridha Sridharan , Duc Thanh Nguyen , Simon Denman , David Dean , Clinton Fookes